Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcttgactcttaaaatgagtgttgtattttaatgtgttttccttcattcagttgctggtttagagccaggggatgtgactgcgaggggctgactactgacggacgcatgcgtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGACTTTGCAGAGGAAACGCCGAAGAGTGGCAATCAAGAAGGCACGCGTCGC

Basic information

species Physcomitrella patens
transcript PP1S253_7V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 5
gtatggtcttgactcttaaaatgagtgttgtattttaatgtgttttccttcattcagttgctggtttagagccaggggatgtgactgcgaggggctgactactgacggacgcatgcgtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGACTTTGCAGAGGAAACGCCGAAGAGTGGCAATCAAGAAGGCACGCGTCGC
                || |||   |||  | |||| |  |    |     || ||||   |  || |  |  || | |       | |  |  ||   |||  ||       |   | | | |||||||||||   ||||| ||||| || |||||||||||||| |||||| ||||| | ||||||||  |    ||| | ||    ||||||  | |  | ||
---------------atataatc--tgtaattttttgacatagcctagcatatgcagtcaat--ttaatggttagtgta-------gagctgacctatttaccaaccatttatttttttcctgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTCACTCCCCTGACTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAGCAAAGAATTGC

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 5
gtatggtcttgactcttaaaatgagtgttg-tattttaatgtgttttccttcattcagttgctggtttagagccaggggatgtgactgcgaggggctgactactgacggacgcatgcgtgcttt-cagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGACTTTGCAGAGGAAACGCCGAAGAGTGGCAATCAAGAAGGCACGCGTCGC
                          |||| | || |||| | ||||  || ||        || | |     | |    | |   | | |  |    |  | ||         || |||| |  |||| |||||| | || |||||||| ||||| |||||||| || ||||||||||||||||| ||||| ||   |||| | |||   |||||     |  | ||
--------------------------gttggtgttctaatttctttt--ttgatgggaaatatgatatgtttactgacattat--ttactaaagatgtatgattggtct-tatctgtgtgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGACTTTGCAAAGGAAGCGGGCAAGAATTGCAGAGAAGAAAAAGAGAATTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208389914|gb|DC937745.1|DC937745
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|67695394|gb|BJ955627.1|BJ955627
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|67572029|gb|BJ944853.1|BJ944853
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162238216|gb|FC414302.1|FC414302
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162208309|gb|FC384621.1|FC384621
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|37834744|gb|BJ592756.1|BJ592756
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|67720727|gb|BJ970986.1|BJ970986
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162265908|gb|FC442911.1|FC442911
EST:     GAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: GAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|37837867|gb|BJ595875.1|BJ595875
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|15727873|gb|BI740506.1|BI740506
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162261446|gb|FC438282.1|FC438282
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|100412712|gb|BY974870.1|BY974870
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCCGAAA-TCCAGAGGCTTGTAACTCCC
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCC-GAAAATCCAGAGGCTTGTAACTCCC
EST: gi|208372876|gb|DC956277.1|DC956277
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162258930|gb|FC435873.1|FC435873
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|67704565|gb|BJ964798.1|BJ964798
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162201193|gb|FC377700.1|FC377700
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208371849|gb|DC951841.1|DC951841
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|7207649|gb|AW561589.1|AW561589
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162278463|gb|FC454549.1|FC454549
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162258931|gb|FC435874.1|FC435874
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162261447|gb|FC438283.1|FC438283
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162230562|gb|FC407152.1|FC407152
EST:     TGTGAGGAAATACGTAGACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|37849016|gb|BJ607024.1|BJ607024
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208395264|gb|DC916073.1|DC916073
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162233727|gb|FC409993.1|FC409993
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162216308|gb|FC392101.1|FC392101
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|15728745|gb|BI740950.1|BI740950
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208362859|gb|DC950809.1|DC950809
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208385764|gb|DC932708.1|DC932708
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|37823714|gb|BJ581780.1|BJ581780
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162230561|gb|FC407151.1|FC407151
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208363727|gb|DC954698.1|DC954698
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162216309|gb|FC392102.1|FC392102
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208345545|gb|DC909235.1|DC909235
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208351869|gb|DC913782.1|DC913782
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|100352755|gb|BY945432.1|BY945432
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAAGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|37851581|gb|BJ609589.1|BJ609589
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCAAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208358888|gb|DC935218.1|DC935218
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208378835|gb|DC927537.1|DC927537
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162238217|gb|FC414303.1|FC414303
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162169172|gb|FC345139.1|FC345139
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162233728|gb|FC409994.1|FC409994
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162262702|gb|FC438484.1|FC438484
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208379134|gb|DC923098.1|DC923098
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208372029|gb|DC936229.1|DC936229
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162201194|gb|FC377701.1|FC377701
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162208308|gb|FC384620.1|FC384620
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208360422|gb|DC950035.1|DC950035
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|37852539|gb|BJ610547.1|BJ610547
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162278464|gb|FC454550.1|FC454550
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|162169173|gb|FC345140.1|FC345140
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|19790319|gb|BQ041809.1|BQ041809
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208388058|gb|DC941697.1|DC941697
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|208388428|gb|DC949344.1|DC949344
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
EST: gi|37844932|gb|BJ602940.1|BJ602940
EST:     TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAG                         GCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA
genomic: TGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 35 (downstream exon)
Score: 52

AAGAGAGCTACCAAAATCCGAAAGCTCTTCAATCTCACCAAGGAGGACGATGTGAGGAAATACGTAAACACATATCGCCGCAGCTTTGTGTCTGCCACAGgtatggtctt ... gtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGACTTTGCAGAGGAAACGCCGAAGAGTGGCAATCAAGAAGGCACGCGTCGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaggggatgtgactgcgaggggctgactactgacggacgcatgcgtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGACTTTGCAGAGGAAACGCCGAAGAGTGGCAATCAAGAAGGCACGCGTCGC
                            tactgac  putative branch site (score: 52)
                                              tgctttc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggtcttgactcttaaaatgagtgttgtattttaatgtgttttccttcattcagttgctggtttagagccaggggatgtgactgcgaggggctgactactgacggacgcatgcgtgctttcagGCAAGAAGAGGAGCAAAGCTCCGAAAATCCAGAGGCTTGTAACTCCCTTGACTTTGCAGAGGAAACGCCGAAGAGTGGCAATCAAGAAGGCACGCGTCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG