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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaccggagcattacctgctcttgcaactatccttggagtgtcacaatctccttggatttgccgttttttttgctgaatttggtctccttgctgaaaagatgcagatagcttcataataatgactactgatcgttgctttcgtagCATCTGGGTGGAAAGAACCTGTTCTACCTTGGGATGTGAGATTCAAAGTAGCACTGGGCATAGCTAAAGCTTTGGATTATCTTCATCACCGTACTTCCCG

Basic information

species Physcomitrella patens
transcript PP1S249_93V6.1
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgaaaagatgcagatagcttcataataatgactactgatcgttgctttcgtagCATCTGGGTGGAAAGAACCTGTTCTACCTTGGGATGTGAGATTCAAAGTAGCACTGGGCATAGCTAAAGCTTTGGATTATCTTCATCACCGTACTTCCCG
                                  tactgat  putative branch site (score: 2)
                                           ttgctttc  putative PPT
                    ttcataataat  TA-rich tract