1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtgccttgctccgaacgatccttgaatcttccagccatcagtcccggttacgatttcacgtgagactgcgtctggtgcgtttcagagctgttgtgaccatctttctgatcactgtacgttttgcggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGGCGTATTCGACCACGGAGGTCACTCTTGGAAGCTTTTTCCCGTGGTTCT
species | Physcomitrella patens |
transcript | PP1S243_27V6.5 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGEST: gi|100410611|gb|BY992184.1|BY992184
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
EST: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGEST: gi|162269880|gb|FC445397.1|FC445397
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
EST: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGEST: gi|162232053|gb|FC409127.1|FC409127
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
EST: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTNGTCGATGTATTTGGCTGGCAAGCTCGEST: gi|208354965|gb|DC914229.1|DC914229
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
EST: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGEST: gi|100411934|gb|BY992412.1|BY992412
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
EST: NGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGEST: gi|162232054|gb|FC409128.1|FC409128
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
EST: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGEST: gi|100420723|gb|BY993477.1|BY993477
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
EST: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGEST: gi|208382440|gb|DC927974.1|DC927974
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
EST: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCAT GGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
genomic: AGCACTCATGAAAGAAGCATACAAGAGCTTCCCTAGTGGTCACACTTCATgtgagtgcct ... ggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCG
tttcagagctgttgtgaccatctttctgatcactgtacgttttgcggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGGCGTATTCGACCACGGAGGTCACTCTTGGAAGCTTTTTCCCGTGGTTCT
ttctgat putative branch site (score: 3)
tcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgccttgctccgaacgatccttgaatcttccagccatcagtcccggttacgatttcacgtgagactgcgtctggtgcgtttcagagctgttgtgaccatctttctgatcactgtacgttttgcggatcttcagGGTCTTTCGCAGGTTTGGGGTACTTGTCGATGTATTTGGCTGGCAAGCTCGGCGTATTCGACCACGGAGGTCACTCTTGGAAGCTTTTTCCCGTGGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG