1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagatttactcgtttcttgtcgtttcattgcgttgaagcagctcgaggaagtggataggtttaccattgctgaggctataacacatgtttcactggtccttttaaatcttacagtttttttattaattgttttttgacgggtttctgttgattgcagTCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTACATTGCTCCAGAGGTCCTGTCGAAGAAAGAGTACGATGGCAAG
species | Physcomitrella patens |
transcript | PP1S240_91V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAGTCCTGCGCCTANGCTGAAAATCTGTGATTTTGGGTATTCAAAG TCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTACEST: gi|162232888|gb|FC407827.1|FC407827
genomic: ATGGAAGTCCTGCGCCTAGGCTGAAAATCTGTGATTTTGGGTATTCAAAGgtgagattta ... ttgattgcagTCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTAC
EST: ATGGAAGTCCTGCGCCTAGGCTGAAAATCTGTGATTTTGGGTATTCAAAG TCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTACEST: gi|162257149|gb|FC432609.1|FC432609
genomic: ATGGAAGTCCTGCGCCTAGGCTGAAAATCTGTGATTTTGGGTATTCAAAGgtgagattta ... ttgattgcagTCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTAC
EST: ATGGAAGTCCTGCGCCTAGGCTGAAAATCTGTGATTTTGGGTATTCAAAG TCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTAC
genomic: ATGGAAGTCCTGCGCCTAGGCTGAAAATCTGTGATTTTGGGTATTCAAAGgtgagattta ... ttgattgcagTCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTAC
taaatcttacagtttttttattaattgttttttgacgggtttctgttgattgcagTCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTACATTGCTCCAGAGGTCCTGTCGAAGAAAGAGTACGATGGCAAG
tttctgtt CT-rich tract
ttacagtttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatttactcgtttcttgtcgtttcattgcgttgaagcagctcgaggaagtggataggtttaccattgctgaggctataacacatgtttcactggtccttttaaatcttacagtttttttattaattgttttttgacgggtttctgttgattgcagTCGTCTTTGTTGCACTCGCAACCCAAGTCGACCGTGGGAACACCTGCCTACATTGCTCCAGAGGTCCTGTCGAAGAAAGAGTACGATGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA