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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaagggtgtagttgagttgttcatttcgagaccaaactttgatggattcgacctggatcatgtaaagacttaacatgtaatatattggtgtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA

Basic information

species Physcomitrella patens
transcript PP1S23_46V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37841690|gb|BJ599698.1|BJ599698
EST:     TCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: TCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162193399|gb|FC368911.1|FC368911
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162260719|gb|FC435371.1|FC435371
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162161664|gb|FC339079.1|FC339079
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162263880|gb|FC438668.1|FC438668
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162205182|gb|FC381280.1|FC381280
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162196916|gb|FC373308.1|FC373308
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162165470|gb|FC340581.1|FC340581
EST:     GGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGAC-TGNCA
genomic: GGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTG-CA
EST: gi|162191850|gb|FC367999.1|FC367999
EST:     GGCTTATGGCTGACAGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162260718|gb|FC435370.1|FC435370
EST:     GCAACCTCAAAGTATGCC-TTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162193398|gb|FC368910.1|FC368910
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|162205183|gb|FC381281.1|FC381281
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
EST: gi|6102178|gb|AW126648.1|AW126648
EST:     GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAG                         GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG
genomic: GGCTTATGGCTGACGGCAACCTCAAAGTATGCCTTTTCGGTCCAGCAGAGgtgagccttg ... gtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcgacctggatcatgtaaagacttaacatgtaatatattggtgtgtcttcagGTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA
                       acttaac  putative branch site (score: 3)
                                              tgtcttc  putative PPT
                         ttaacatgtaatatat  TA-rich tract