1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagatattgcctgttctgtgtcttgtgaaatacttgatttgttattgttggaataatcgatagtgctcacctttaaattgctattattatcagaaaagtttataactactcccttatcagtgtgatgtgggatatgtattgccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG
species | Physcomitrella patens |
transcript | PP1S237_60V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACT CTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCEST: gi|162215024|gb|FC391312.1|FC391312
genomic: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACTgtaagatatt ... ccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGC
EST: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACT CTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCEST: gi|162153743|gb|FC329146.1|FC329146
genomic: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACTgtaagatatt ... ccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGC
EST: CCTTATCGCTCCTACT CTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCEST: gi|162154880|gb|FC331922.1|FC331922
genomic: CCTTATCGCTCCTACTgtaagatatt ... ccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGC
EST: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACT CTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCEST: gi|162150938|gb|FC327418.1|FC327418
genomic: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACTgtaagatatt ... ccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGC
EST: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACT CTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCEST: gi|19785698|gb|BQ040360.1|BQ040360
genomic: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACTgtaagatatt ... ccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGC
EST: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACT CTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCEST: gi|208382991|gb|DC927741.1|DC927741
genomic: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACTgtaagatatt ... ccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGC
EST: TCATAATNGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCNTACT CTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGC
genomic: TCATAATTGTGATTGGAATCGTCCTTTTCGGTGGCCTTATCGCTCCTACTgtaagatatt ... ccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGC
agtttataactactcccttatcagtgtgatgtgggatatgtattgccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG
ttataac putative branch site (score: 6)
atatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatattgcctgttctgtgtcttgtgaaatacttgatttgttattgttggaataatcgatagtgctcacctttaaattgctattattatcagaaaagtttataactactcccttatcagtgtgatgtgggatatgtattgccgagaacagCTGGAGCTGAAGCTGGGCATTGGAGGTACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT