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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattgtcatgaaattacttctaaggtcaattgctacagctgtattaagttctacctttggtaatgtaacacgattcaaggtattaatgaaatagtgagattcatggtttgttttgtttctcagAGTGAGATTACTCCATTTAAACCTTTCAATCATCGGTTCCCTACACCATACTGGGCAACCAACAGCACTTCACCCCAGTGGTATTCCGTCAGGCGTGGAC

Basic information

species Physcomitrella patens
transcript PP1S235_62V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208370970|gb|DC944345.1|DC944345
EST:     GGATATGGACATC-NGAAACCATGAGATTGATTATGTCCCTGAAATT                         AGTGAGATTACTCCATTTAAACCTTTCAATCATCGGTTCCCTACACCATAC
genomic: GGATATGGACATCTGGAAACCATGAGATTGATTATGTCCCTGAAATTgtaagtattg ... tgtttctcagAGTGAGATTACTCCATTTAAACCTTTCAATCATCGGTTCCCTACACCATAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgattcaaggtattaatgaaatagtgagattcatggtttgttttgtttctcagAGTGAGATTACTCCATTTAAACCTTTCAATCATCGGTTCCCTACACCATACTGGGCAACCAACAGCACTTCACCCCAGTGGTATTCCGTCAGGCGTGGAC
            tattaat  putative branch site (score: 2)
                                      tttgttttgtttctc  putative PPT
            tattaatgaaatagt  TA-rich tract