1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtacgcctcgtgatttctagatggtctcatatcaactttctccaattttttgattatctatgcttattcatctgagacgtatcttgtgaaggctgatttgtttcttctagtacgctgccatgaagtcgatgattcatatttttattttaaattcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAGAAGTCCTTACAGATGCATGCTGGGCCCTATCTTATTTGTCCGATGGAA
species | Physcomitrella patens |
transcript | PP1S230_50V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAEST: gi|162187770|gb|FC364162.1|FC364162
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAEST: gi|162151533|gb|FC327246.1|FC327246
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAEST: gi|162169532|gb|FC346096.1|FC346096
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAEST: gi|162150096|gb|FC325990.1|FC325990
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAEST: gi|162163635|gb|FC340260.1|FC340260
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAEST: gi|162231012|gb|FC407267.1|FC407267
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAEST: gi|162256743|gb|FC432637.1|FC432637
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAEST: gi|162170803|gb|FC347417.1|FC347417
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
EST: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAG TCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
genomic: GGACCCTATCCAACTTTTGTCGTGGCAAGCCTCAGCCACCTTTCGAGCAGgtttgtacgc ... attcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAA
tctagtacgctgccatgaagtcgatgattcatatttttattttaaattcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAGAAGTCCTTACAGATGCATGCTGGGCCCTATCTTATTTGTCCGATGGAA
ttcttgc CT-rich tract
atgattcatattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtacgcctcgtgatttctagatggtctcatatcaactttctccaattttttgattatctatgcttattcatctgagacgtatcttgtgaaggctgatttgtttcttctagtacgctgccatgaagtcgatgattcatatttttattttaaattcttgcagTCCAAGCCTGCACTCCCAGCTTTGGAGCGACTCATTCATTCAAATGATGAAGAAGTCCTTACAGATGCATGCTGGGCCCTATCTTATTTGTCCGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA