1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaccactgtataaattgttcatagagattttttggttgctggtatacacattagttcgctcagtaagcatttctctaactgttttttctgtcttgggacgtcgctatgtcttttgctaaaaggtgagatgattttgtctgctgcagGCAATTATTGAAAGAATGGGCGAACTGGAGAAACAAGACTAGATTTTATCCTTCCAGTTTTTGGTTTGAGTTTCATCTCACAGCTTAGAAAGTCGGTATG
species | Physcomitrella patens |
transcript | PP1S220_70V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTGGATGAGTTCATTCTTGCTGGTGAATTGCAAGAAACCAGCAAAAAG GCAATTATTGAAAGAATGGGCGAACTGGAGAAACAAGACTAGATTTTATCCEST: gi|162216445|gb|FC393278.1|FC393278
genomic: TATTGGATGAGTTCATTCTTGCTGGTGAATTGCAAGAAACCAGCAAAAAGgtaaccactg ... tctgctgcagGCAATTATTGAAAGAATGGGCGAACTGGAGAAACAAGACTAGATTTTATCC
EST: TATTGGATGAGTTCATTCTTGCTGGTGAATTGCAAGAAACCAGCAAAAAG GCAATTATTGAAAGAATGGGCGAACTGGAGAAACAAGACTAGATTTTATCCEST: gi|15261367|gb|BI436677.1|BI436677
genomic: TATTGGATGAGTTCATTCTTGCTGGTGAATTGCAAGAAACCAGCAAAAAGgtaaccactg ... tctgctgcagGCAATTATTGAAAGAATGGGCGAACTGGAGAAACAAGACTAGATTTTATCC
EST: TATTGGATGAGTTCATTCTTGCTGGTGAATTGCAAGAAACCAGCAAAAAG GCAATTATTGAAAGAATGGGCGAACTGGAGAAACAAGACTAGATTTTATCC
genomic: TATTGGATGAGTTCATTCTTGCTGGTGAATTGCAAGAAACCAGCAAAAAGgtaaccactg ... tctgctgcagGCAATTATTGAAAGAATGGGCGAACTGGAGAAACAAGACTAGATTTTATCC
cttgggacgtcgctatgtcttttgctaaaaggtgagatgattttgtctgctgcagGCAATTATTGAAAGAATGGGCGAACTGGAGAAACAAGACTAGATTTTATCCTTCCAGTTTTTGGTTTGAGTTTCATCTCACAGCTTAGAAAGTCGGTATG
tgctaaa putative branch site (score: 5)
ttttgtct putative PPT
atgatttt TA-rich tract