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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catataatcatgactttgctggtcatacgtttgagggattgcagtgaacctgctgccattttgacaattcgattttactggtcttttacgtgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTTGGAGATGAAGCAGAACCTGCAGCTGAGGCTGCCCCAGTTCCTGGAGCTT

Basic information

species Physcomitrella patens
transcript PP1S219_50V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162266508|gb|FC442544.1|FC442544
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37848007|gb|BJ606015.1|BJ606015
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162269619|gb|FC444850.1|FC444850
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCCCGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162268891|gb|FC445713.1|FC445713
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162263546|gb|FC439575.1|FC439575
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162238312|gb|FC415880.1|FC415880
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37844486|gb|BJ602494.1|BJ602494
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37850583|gb|BJ608591.1|BJ608591
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTN
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162280002|gb|FC456188.1|FC456188
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162248983|gb|FC420338.1|FC420338
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37833165|gb|BJ591177.1|BJ591177
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162217288|gb|FC392028.1|FC392028
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|208362470|gb|DC943725.1|DC943725
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162263545|gb|FC439574.1|FC439574
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162260761|gb|FC435413.1|FC435413
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162270425|gb|FC447541.1|FC447541
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162217289|gb|FC392029.1|FC392029
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37841165|gb|BJ599173.1|BJ599173
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37851791|gb|BJ609799.1|BJ609799
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162266098|gb|FC441847.1|FC441847
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162280003|gb|FC456189.1|FC456189
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162248982|gb|FC420337.1|FC420337
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGCCCTTATGAAGTTGATGGAG                         GTCCCCGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGCCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162266507|gb|FC442543.1|FC442543
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|67693434|gb|BJ953667.1|BJ953667
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|67699231|gb|BJ959464.1|BJ959464
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37845626|gb|BJ603634.1|BJ603634
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162258377|gb|FC434928.1|FC434928
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162259533|gb|FC435460.1|FC435460
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|18339907|gb|BJ171934.1|BJ171934
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGNCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|67575193|gb|BJ948017.1|BJ948017
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162268892|gb|FC445714.1|FC445714
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37826666|gb|BJ584678.1|BJ584678
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAAAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162258378|gb|FC434929.1|FC434929
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|67695290|gb|BJ955523.1|BJ955523
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162266097|gb|FC441846.1|FC441846
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162276244|gb|FC452598.1|FC452598
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACCGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162252181|gb|FC425859.1|FC425859
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162260760|gb|FC435412.1|FC435412
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162263259|gb|FC439067.1|FC439067
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|18340646|gb|BJ172675.1|BJ172675
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|15261389|gb|BI436699.1|BI436699
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162276243|gb|FC452597.1|FC452597
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162259534|gb|FC435461.1|FC435461
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37842939|gb|BJ600947.1|BJ600947
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162269620|gb|FC444851.1|FC444851
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|67698651|gb|BJ958884.1|BJ958884
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162265018|gb|FC441521.1|FC441521
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|208365423|gb|DC950890.1|DC950890
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162270426|gb|FC447542.1|FC447542
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37844498|gb|BJ602506.1|BJ602506
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|162265017|gb|FC441520.1|FC441520
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37843987|gb|BJ601995.1|BJ601995
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
EST: gi|37832956|gb|BJ590968.1|BJ590968
EST:     AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAG                         GTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT
genomic: AAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 129

TGAGAAAGCAACTCAGGGCATCTACCCACTTCAGAACACTTTCATTAGGAAAGTGAAGATCCTTAAGGCTCCGAAGTTCGACCTTATGAAGTTGATGGAGgtacgttaag ... tgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTTGGAGATGAAGCAGAACCTGCAGCTGAGGCTGCCCCAGTTCCTGGAGCTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacctgctgccattttgacaattcgattttactggtcttttacgtgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTTGGAGATGAAGCAGAACCTGCAGCTGAGGCTGCCCCAGTTCCTGGAGCTT
             ttttgac  putative branch site (score: 129)
                          attttact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catataatcatgactttgctggtcatacgtttgagggattgcagtgaacctgctgccattttgacaattcgattttactggtcttttacgtgtctggtagGTCCACGGAGATTACAGCGAGGAAGTCGGTGCCAAGATCGAGAGGCCAGTTGGAGATGAAGCAGAACCTGCAGCTGAGGCTGCCCCAGTTCCTGGAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - tgctgcc