1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttttgtcctgctctctccttagtgttttcttctggactggattttgtattttcagctttttgagaaacatgtacagaatctcactgtagaacttgttttaagaagttgggtcattcacttggctaagctcaaggcccttgttctcctcctgatcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGAAAGAAAAGGCTCCTTGTATCATTTTCATTGATGAGGTGGATGCTATTG
species | Physcomitrella patens |
transcript | PP1S218_133V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162195316|gb|FC370837.1|FC370837
genomic: GGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162155456|gb|FC330952.1|FC330952
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162162467|gb|FC339198.1|FC339198
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: TTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATNGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|208379283|gb|DC927280.1|DC927280
genomic: TTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162279775|gb|FC455683.1|FC455683
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162260448|gb|FC435061.1|FC435061
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCANACAAATGCTACTTTCTTGAAGCTTGCTGGACTTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGNCAAA-CTTGTGAGGGACGCGTTTCAGTTGGCEST: gi|162173414|gb|FC349793.1|FC349793
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTG-CAAAACTTGTGAGGGACGCGTTTCAGTTGGC
EST: GAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATNGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162168239|gb|FC344969.1|FC344969
genomic: GAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: GCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|208346751|gb|DC917534.1|DC917534
genomic: GCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: TGAAGCNTGCTGGACCTCAGCNTGTTCAG ATGNTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162176625|gb|FC352470.1|FC352470
genomic: TGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: TTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATNGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|208353165|gb|DC921867.1|DC921867
genomic: TTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAAC-AATGCTACTTTTTTGAAGCTTGCTNGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|208348181|gb|DC920972.1|DC920972
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: AAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTNTCAGTTGGCGEST: gi|208360654|gb|DC946420.1|DC946420
genomic: AAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: AAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|208395421|gb|DC924475.1|DC924475
genomic: AAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: AAGCNTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGC-AAACCTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|208373658|gb|DC952483.1|DC952483
genomic: AAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162155457|gb|FC330953.1|FC330953
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|208395675|gb|DC924197.1|DC924197
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|15590637|gb|BI675253.1|BI675253
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162167872|gb|FC344810.1|FC344810
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCANACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGEST: gi|162195315|gb|FC370836.1|FC370836
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
EST: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAG ATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
genomic: CTCAAACAAATGCTACTTTCTTGAAGCTTGCTGGACCTCAGCTTGTTCAGgttttgtcct ... atcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCG
tgggtcattcacttggctaagctcaaggcccttgttctcctcctgatcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGAAAGAAAAGGCTCCTTGTATCATTTTCATTGATGAGGTGGATGCTATTG
tcctgat putative branch site (score: 13)
ttctcctcctgatc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtcctgctctctccttagtgttttcttctggactggattttgtattttcagctttttgagaaacatgtacagaatctcactgtagaacttgttttaagaagttgggtcattcacttggctaagctcaaggcccttgttctcctcctgatcgttgcagATGTTCATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTTCAGTTGGCGAAAGAAAAGGCTCCTTGTATCATTTTCATTGATGAGGTGGATGCTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA