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gttaggaccacaacccactctgctttcactctcttgaatgcctgatttgattccgaacttgaaatcatattatatgctgttgctgaaactagattttaatccatttttcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAAATGTACAGCTTGCTGTTGGAGGCGTACATAAAGGATCAGTCTGAGAAGC
species | Physcomitrella patens |
transcript | PP1S215_91V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGAGAACCTGGCCGTGCGCTTTCATGAA-GAGATTCAAATACNNCGAG -CCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAEST: gi|162209778|gb|FC385712.1|FC385712
genomic: CTTGAGAACCTGGCCGTGCGCTT-CATGAAAGAGATTCAAATACC-CGAGgttaggacca ... tcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGA
EST: TGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAG GCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAAEST: gi|162262142|gb|FC437911.1|FC437911
genomic: TGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAGgttaggacca ... tcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAA
EST: TGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAG GCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAA
genomic: TGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAGgttaggacca ... tcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAA
aatcatattatatgctgttgctgaaactagattttaatccatttttcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAAATGTACAGCTTGCTGTTGGAGGCGTACATAAAGGATCAGTCTGAGAAGC
ttttaat putative branch site (score: 3)
tccatttttc CT-rich tract
attttaatccattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggaccacaacccactctgctttcactctcttgaatgcctgatttgattccgaacttgaaatcatattatatgctgttgctgaaactagattttaatccatttttcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAAATGTACAGCTTGCTGTTGGAGGCGTACATAAAGGATCAGTCTGAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC