1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaataatttcaactggcgctctttcttactctgcagttcttgctttcttcttgttgcacatgaactgaaagatgacaggtcttttgctttgcattgaatcttctaataagttgagagctagtaatcaagtctgtacaaatctcagtgatagctagcgcatactaaaacacccggacgctgagttgcagGGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCTCAAGGAATTCTTGTTATTGCATTCTGTCAAGTCATTCTCATG
species | Physcomitrella patens |
transcript | PP1S215_109V6.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCAATTTTCGGAGCCTGTTTGGTGGAAAGTGGGATATGCTAAACTTCAG GGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCTEST: gi|162262567|gb|FC439753.1|FC439753
genomic: TCCAATTTTCGGAGCCTGTTTGGTGGAAAGTGGGATATGCTAAACTTCAGgtaataattt ... tgagttgcagGGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCT
EST: TCCAATTTTCGGAGCCTGTTTGGTGGAAAGTGGGATATGCTAAACTTCAG GGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCTEST: gi|162276352|gb|FC452433.1|FC452433
genomic: TCCAATTTTCGGAGCCTGTTTGGTGGAAAGTGGGATATGCTAAACTTCAGgtaataattt ... tgagttgcagGGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCT
EST: TCCAATTTTCGGAGCCTGTTTGGTGGAAAGTGGGATATGCTAAACTTCAG GGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCT
genomic: TCCAATTTTCGGAGCCTGTTTGGTGGAAAGTGGGATATGCTAAACTTCAGgtaataattt ... tgagttgcagGGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCT
tacaaatctcagtgatagctagcgcatactaaaacacccggacgctgagttgcagGGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCTCAAGGAATTCTTGTTATTGCATTCTGTCAAGTCATTCTCATG
tactaaa putative branch site (score: 1)
atactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatttcaactggcgctctttcttactctgcagttcttgctttcttcttgttgcacatgaactgaaagatgacaggtcttttgctttgcattgaatcttctaataagttgagagctagtaatcaagtctgtacaaatctcagtgatagctagcgcatactaaaacacccggacgctgagttgcagGGTGACACACTTGATTACCTGGGTATTCCTGGCCTGCACATTGCTGGTGCTCAAGGAATTCTTGTTATTGCATTCTGTCAAGTCATTCTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA