1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatacttttccaaccgtacactgtgattgtgaagttcatcattattgtttgccacgatgcaggaaagcttgaaccctactggtagtttttaacacgaagtaacatgcatttcgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAAGACTCTGACGACAGATAAGGGAGATGTCTACAGTTATGGAACTCTGGT
species | Physcomitrella patens |
transcript | PP1S211_74V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAG GTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAEST: gi|67570576|gb|BJ943400.1|BJ943400
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACA
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAG GTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAEST: gi|67575987|gb|BJ948811.1|BJ948811
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACA
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAG GTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAEST: gi|18360801|gb|BJ192864.1|BJ192864
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACA
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAG GTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAEST: gi|67570976|gb|BJ943800.1|BJ943800
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACA
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAA NEST: gi|67570976|gb|BJ943800.1|BJ943800
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcag-
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAA NEST: gi|18356830|gb|BJ188889.1|BJ188889
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcag-
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAG GTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAEST: gi|100450787|gb|CJ974439.1|CJ974439
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACA
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAG GTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAEST: gi|18332007|gb|BJ164019.1|BJ164019
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACA
EST: TGTAGGAAGCGGTGGANAGAGACAGTTACCGGACTGGTATGCCGAAAAAG GTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAEST: gi|18332207|gb|BJ164220.1|BJ164220
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTA
EST: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAG GTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACA
genomic: TGTAGGAAGCGGTGGAGAGAGACAGTTACCGGACTGGTATGCCGAAAAAGgtatactttt ... cgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACA
gcttgaaccctactggtagtttttaacacgaagtaacatgcatttcgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAAGACTCTGACGACAGATAAGGGAGATGTCTACAGTTATGGAACTCTGGT
aagtaac putative branch site (score: 2)
tagtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacttttccaaccgtacactgtgattgtgaagttcatcattattgtttgccacgatgcaggaaagcttgaaccctactggtagtttttaacacgaagtaacatgcatttcgactgtcagGTATTGAACTGAAACTGGAGTCTGAGATTGTGAAGGCCGACCTAGAGAACAAGACTCTGACGACAGATAAGGGAGATGTCTACAGTTATGGAACTCTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG