1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attttacattcgcgtcaaatgaatttccttcaagtaattttgatttaccatgtgcaatttaagtattcgattggactactgatactcgttgcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGATCTCCCAAGGAAACACGGTGGTGGTTTCATGACGATAAAGTATGAGTTA
species | Physcomitrella patens |
transcript | PP1S211_21V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAG GCCAGACCACCTGATGACGACCGTTATGTGAGGAAATGCCGAAATGGCAGAEST: gi|162160478|gb|FC336868.1|FC336868
genomic: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtacttttta ... gcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
EST: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAG GCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGAEST: gi|208393338|gb|DC942464.1|DC942464
genomic: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtacttttta ... gcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
EST: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAG GCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGAEST: gi|208365856|gb|DC955459.1|DC955459
genomic: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtacttttta ... gcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
EST: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAG GCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGAEST: gi|67579063|gb|BJ951214.1|BJ951214
genomic: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtacttttta ... gcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
EST: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAG GCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGAEST: gi|162221639|gb|FC397864.1|FC397864
genomic: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtacttttta ... gcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
EST: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAG GCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGAEST: gi|208366092|gb|DC951209.1|DC951209
genomic: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtacttttta ... gcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
EST: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAG GCCAGACCACCTGATGACGACCGTTATGTGAGGAAATGCCGAAATGGCAGAEST: gi|162160477|gb|FC336867.1|FC336867
genomic: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtacttttta ... gcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
EST: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAG GCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
genomic: GTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtacttttta ... gcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGA
taccatgtgcaatttaagtattcgattggactactgatactcgttgcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGATCTCCCAAGGAAACACGGTGGTGGTTTCATGACGATAAAGTATGAGTTA
tactgat putative branch site (score: 14)
aatttaagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttacattcgcgtcaaatgaatttccttcaagtaattttgatttaccatgtgcaatttaagtattcgattggactactgatactcgttgcttgaacagGCCAGACCACCTGATGACGATCGTTATGTGAGGAAATGCCGAAATGGCAGATCTCCCAAGGAAACACGGTGGTGGTTTCATGACGATAAAGTATGAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG