1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaatttcgcttaaacggtaactctgctgctgtaagagatagttttaacttttagaccctagtcaataaagtgatctcgcgcacagagtctcaactgtgcggccttaaagattgacattttttcagatcttcgcggtgtgaaacgtccttctgagcatattttccgttgattacagGATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATTGGGCGCCTTGACAGTCGT
species | Physcomitrella patens |
transcript | PP1S204_22V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATTEST: gi|18328336|gb|BJ160340.1|BJ160340
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATT
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAAEST: gi|18329206|gb|BJ161212.1|BJ161212
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATAA
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAEST: gi|100396548|gb|BY990180.1|BY990180
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATA
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATTEST: gi|18358397|gb|BJ190456.1|BJ190456
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATT
EST: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAAT GATATTGAACAACAATAAATT
genomic: AACATCGAAGGAAATATTCCTCAACAGTTTCCTACGTCTCTTACTCAAATgtaaatttcg ... ttgattacagGATATTGAACAACAATAAATT
ttcagatcttcgcggtgtgaaacgtccttctgagcatattttccgttgattacagGATATTGAACAACAATAAATTGACCGGAGGTCTCCCACAGTTTGATCAATTGGGCGCCTTGACAGTCGT
cgttgat putative branch site (score: 6)
ttttccgtt CT-rich tract
atatttt TA-rich tract