1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actggcgattggatactcagattgattagagcaggtgagataaggtgatagtcacttgcagggttaaagcgagttttgacgattttgaattcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTCGGAGCTACACAAGGCTCATGGTTCAGGAGAAGATGACATCTAATAAGG
species | Physcomitrella patens |
transcript | PP1S199_23V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAG AAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTEST: gi|37852535|gb|BJ610543.1|BJ610543
genomic: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAGgtataatccc ... tcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTT
EST: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAG AAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTEST: gi|37837061|gb|BJ595069.1|BJ595069
genomic: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAGgtataatccc ... tcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTT
EST: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAG AAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTEST: gi|162235148|gb|FC411244.1|FC411244
genomic: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAGgtataatccc ... tcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTT
EST: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAG AAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTEST: gi|37848004|gb|BJ606012.1|BJ606012
genomic: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAGgtataatccc ... tcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTT
EST: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAG AAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTEST: gi|37830821|gb|BJ588833.1|BJ588833
genomic: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAGgtataatccc ... tcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTT
EST: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAG AAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTEST: gi|162235149|gb|FC411245.1|FC411245
genomic: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAGgtataatccc ... tcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTT
EST: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAG AAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTEST: gi|208346849|gb|DC913088.1|DC913088
genomic: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAGgtataatccc ... tcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTT
EST: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAA- AAACGGCGAGAA
genomic: CCTACAACGCTGCAGAGAGAAATGAACGGAAGGCACATATCAAGGAGAAGgtataatccc ... tcaaatgcagAAACGGCGAGAA
tgatagtcacttgcagggttaaagcgagttttgacgattttgaattcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTCGGAGCTACACAAGGCTCATGGTTCAGGAGAAGATGACATCTAATAAGG
ttttgac putative branch site (score: 27)
attttgaattcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actggcgattggatactcagattgattagagcaggtgagataaggtgatagtcacttgcagggttaaagcgagttttgacgattttgaattcaaatgcagAAACGGCGAGAAGAAATAGAGCGGTTGGAAAAGGAGAAGCAGGCAGAACTTCGGAGCTACACAAGGCTCATGGTTCAGGAGAAGATGACATCTAATAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - cacttgc