1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgtctcatactagaataaagtacaaccaagtagcaagaagtgcaaaatatttttgaggttgacgtgaacatttttttatcttctgttttgttggtcaagttgctgaaatgcaatctgcggcagtctaatattttgtgccgtattgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGCCAGGTCGGCTGAGAATTTTCTTTCCAACGGGGACGAGTTGGACATCTC
species | Physcomitrella patens |
transcript | PP1S197_12V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGGAGCGGAAAATCCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|6102256|gb|AW126726.1|AW126726
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|67691341|gb|BJ951574.1|BJ951574
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|208399259|gb|DC912460.1|DC912460
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|37833887|gb|BJ591899.1|BJ591899
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|162199893|gb|FC376459.1|FC376459
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|67717109|gb|BJ967368.1|BJ967368
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|37841975|gb|BJ599983.1|BJ599983
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATCCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|162251127|gb|FC426404.1|FC426404
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|67508124|gb|BJ940995.1|BJ940995
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|162251128|gb|FC426405.1|FC426405
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|18352449|gb|BJ184503.1|BJ184503
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGEST: gi|162199892|gb|FC376458.1|FC376458
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|37848516|gb|BJ606524.1|BJ606524
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|208350547|gb|DC926238.1|DC926238
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGEST: gi|18360281|gb|BJ192343.1|BJ192343
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
EST: CGGGAGCGGAAAATCCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGGCEST: gi|67725632|gb|BJ975891.1|BJ975891
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGG-C
EST: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAG TTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
genomic: CGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctca ... attgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCG
aagttgctgaaatgcaatctgcggcagtctaatattttgtgccgtattgttccagTTATGAAGATTGGGGCGTGGACGAGTTGATCGTAGAAGATTCTTGGAGGCGCCAGGTCGGCTGAGAATTTTCTTTCCAACGGGGACGAGTTGGACATCTC
gtctaat putative branch site (score: 44)
ttgttcc putative PPT
tctaatatttt TA-rich tract