1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttctgtaacctgcgttttgagggaagcttgcacatgtcgtcaagtaatctacgcttataacctttatcagattaacaaatttgatattttcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGCTACCGAG
species | Physcomitrella patens |
transcript | PP1S197_115V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTG GTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGEST: gi|162212343|gb|FC388071.1|FC388071
genomic: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTGgtgtgtattc ... tcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTG
EST: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTG GTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGEST: gi|208368978|gb|DC955063.1|DC955063
genomic: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTGgtgtgtattc ... tcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTG
EST: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTG GTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGEST: gi|162212342|gb|FC388070.1|FC388070
genomic: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTGgtgtgtattc ... tcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTG
EST: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTG GTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGEST: gi|100398742|gb|BY990493.1|BY990493
genomic: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTGgtgtgtattc ... tcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTG
EST: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTG GTGTGGAACATTTGTTAAGGGEST: gi|100362914|gb|BY947592.1|BY947592
genomic: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTGgtgtgtattc ... tcgtgtgcagGTGTGGAACATTTGTTAAGGG
EST: TTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCCGAG-AAATTG GTGTGGAACATTTTGT-AAGGGATGTGA-GGNATGCGACCATCAGCACTCTEST: gi|208371459|gb|DC955795.1|DC955795
genomic: TTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCC-GAGGAAATTGgtgtgtattc ... tcgtgtgcagGTGTGGAACATTT-GTTAAGGGATGTGAAGG-ATGCGACCATCAGCACTCT
EST: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTG GTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGEST: gi|37826136|gb|BJ584148.1|BJ584148
genomic: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTGgtgtgtattc ... tcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTG
EST: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTG GTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTG
genomic: GTTTGTGCATGTTGCCTCTGAGATTGGAGCCTACGAGGCCGAGGAAATTGgtgtgtattc ... tcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTG
taatctacgcttataacctttatcagattaacaaatttgatattttcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGCTACCGAG
tattttc CT-rich tract
tttatcagattaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctgtaacctgcgttttgagggaagcttgcacatgtcgtcaagtaatctacgcttataacctttatcagattaacaaatttgatattttcgtgtgcagGTGTGGAACATTTGTTAAGGGATGTGAAGGATGCGACCATCAGCACTCTTGCTACCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - -cacatgt