Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctattcgatccagtaatgcgttttatgtttcgtccaccctagaatcactctacctattgatctagttttgcaagacctacatcctgtgaccaatcgaattttaacgtttacttggatttcagttcgtaatgtgttgaactgtggtgttctgtgcagCTGGTTATGAGGTTTGCGAACCGCTTCTTCGTGCCTATTTGGAATCGAGACAATATAGCTAGTGTTCAG

Basic information

species Physcomitrella patens
transcript PP1S192_39V6.5
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162279046|gb|FC455073.1|FC455073
EST:     AACTTTACCGCATTGACCATTATCTTGGGAAGGAGCTTGTACAAAATTTA                         CTGGTTATGAGGTTTGCGAACCGCTTCTTCGTGCCTATTTGGAATCGAGAC
genomic: AACTTTACCGCATTGACCATTATCTTGGGAAGGAGCTTGTACAAAATTTAgtatgttcta ... ttctgtgcagCTGGTTATGAGGTTTGCGAACCGCTTCTTCGTGCCTATTTGGAATCGAGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacgtttacttggatttcagttcgtaatgtgttgaactgtggtgttctgtgcagCTGGTTATGAGGTTTGCGAACCGCTTCTTCGTGCCTATTTGGAATCGAGACAATATAGCTAGTGTTCAG
 ttttaac  putative branch site (score: 2)
     tttactt  TA-rich tract