1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacttcatcatgcactcccgtattttctggcaagaacagagttgctgaaaatttgacacattcgaatatgtgattgtctgaatgcgagataccttttgatcgtcgtccaacgtgtgtagtcggatctgagctcgcaattcgtgtttctgagcattgtattgcatgctgatgtgcagGCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGTACCATAGGGTTAGGCGTATATCAAAACTGTAAAGGAGGTATCGCATGTG
species | Physcomitrella patens |
transcript | PP1S190_76V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAG GCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGTEST: gi|67698675|gb|BJ958908.1|BJ958908
genomic: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAGgtacttcatc ... tgatgtgcagGCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGT
EST: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAG GCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGTEST: gi|162156935|gb|FC333089.1|FC333089
genomic: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAGgtacttcatc ... tgatgtgcagGCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGT
EST: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAG GCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGTEST: gi|37845993|gb|BJ604001.1|BJ604001
genomic: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAGgtacttcatc ... tgatgtgcagGCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGT
EST: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCGGTACTCCCAG GCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGTEST: gi|162277254|gb|FC453684.1|FC453684
genomic: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAGgtacttcatc ... tgatgtgcagGCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGT
EST: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAG GCAAATCAATAAATCTC
genomic: ACGCTGTTGGTGCTGCCATTGCCATCTTCGGAACTTTTCTGTACTCCCAGgtacttcatc ... tgatgtgcagGCAAATCAATAAATCTC
ggatctgagctcgcaattcgtgtttctgagcattgtattgcatgctgatgtgcagGCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGTACCATAGGGTTAGGCGTATATCAAAACTGTAAAGGAGGTATCGCATGTG
tgctgat putative branch site (score: 14)
attgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttcatcatgcactcccgtattttctggcaagaacagagttgctgaaaatttgacacattcgaatatgtgattgtctgaatgcgagataccttttgatcgtcgtccaacgtgtgtagtcggatctgagctcgcaattcgtgtttctgagcattgtattgcatgctgatgtgcagGCAAATCAATAAATCTCGGAGCATTGCGAGGCCTGGAGTGTCCTAAACTGTACCATAGGGTTAGGCGTATATCAAAACTGTAAAGGAGGTATCGCATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG