1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatcaattgggttataccgcctcctagaaaatggaacggagcactttcaaaatctgttaatttaacttgattcatgatttcggcttttatttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTAAACCTCCTGGGTTTCTGTATATTTGAGATGTGTGTGGGAGTTTTCTGGC
species | Physcomitrella patens |
transcript | PP1S18_8V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAA TTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTAEST: gi|208372439|gb|DC952283.1|DC952283
genomic: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttc ... tttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
EST: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAA TTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTAEST: gi|162268231|gb|FC444520.1|FC444520
genomic: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttc ... tttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
EST: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAA TTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTAEST: gi|162268232|gb|FC444521.1|FC444521
genomic: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttc ... tttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
EST: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAA TTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
genomic: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttc ... tttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
tttcaaaatctgttaatttaacttgattcatgatttcggcttttatttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTAAACCTCCTGGGTTTCTGTATATTTGAGATGTGTGTGGGAGTTTTCTGGC
cttttattt CT-rich tract
aaatctgttaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatcaattgggttataccgcctcctagaaaatggaacggagcactttcaaaatctgttaatttaacttgattcatgatttcggcttttatttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTAAACCTCCTGGGTTTCTGTATATTTGAGATGTGTGTGGGAGTTTTCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG