1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tctctttgtgatcatctttacgtagagctgtgcgtttcattttgatattcaattttgattgcaaaagggtctaactattcagcaatctgctaatgatcagGGTATGCTTCGGAGTCTATGTTCAGCAATTGATATTCCATTTCAGTCATCAATGCTGAG
species | Physcomitrella patens |
transcript | PP1S180_110V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCAAATACCACCTATAATTGATGCTACGGATCTAAGGCGCGACCCAGAG GGTATGCTTCGGAGTCTATGTTCAGCAATTGATATTCCATTTCAGTCATCAEST: gi|162255545|gb|FC431335.1|FC431335
genomic: ATCAAATACCACCTATAATTGATGCTACGGATCTAAGGCGCGACCCAGAGgtactacaac ... taatgatcagGGTATGCTTCGGAGTCTATGTTCAGCAATTGATATTCCATTTCAGTCATCA
EST: ATCAAATACCACCTATAATTGATGCTACGGATCTAAGGCGCGACCCAGAG GGTATGCTTCGGAGTCTATGTTCAGCAATTGATATTCCATTTCAGTCATCAEST: gi|100423882|gb|BY976572.1|BY976572
genomic: ATCAAATACCACCTATAATTGATGCTACGGATCTAAGGCGCGACCCAGAGgtactacaac ... taatgatcagGGTATGCTTCGGAGTCTATGTTCAGCAATTGATATTCCATTTCAGTCATCA
EST: ATCANATACCACCTATAATTGATGCTACGGATCTAAGGCGCGACCCAGAG GGTATGCTTCGGAGTCTATGTTCAEST: gi|100437096|gb|BY961349.1|BY961349
genomic: ATCAAATACCACCTATAATTGATGCTACGGATCTAAGGCGCGACCCAGAGgtactacaac ... taatgatcagGGTATGCTTCGGAGTCTATGTTCA
EST: ATCAAATACCACCTATAATTGATGCTACGGATCTAAGGCGCGACCCAGAG GGTATGCTTCGGAGTCTATGTTCAGCA
genomic: ATCAAATACCACCTATAATTGATGCTACGGATCTAAGGCGCGACCCAGAGgtactacaac ... taatgatcagGGTATGCTTCGGAGTCTATGTTCAGCA
tattcaattttgattgcaaaagggtctaactattcagcaatctgctaatgatcagGGTATGCTTCGGAGTCTATGTTCAGCAATTGATATTCCATTTCAGTCATCAATGCTGAG
tgctaat putative branch site (score: 3)
aattttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctttgtgatcatctttacgtagagctgtgcgtttcattttgatattcaattttgattgcaaaagggtctaactattcagcaatctgctaatgatcagGGTATGCTTCGGAGTCTATGTTCAGCAATTGATATTCCATTTCAGTCATCAATGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG