Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacaccttttgctctaatgcttttcctgtacttaggcctgtttttaaactttcctggatcccaattggttgggagatcatacttgatttaatcgcgacttaacggtgttcggttgtatgcagGAAATTCAAGAGTTTTTTGTGAAGTACATGGTAACTGACAGCCTGGGTGTAATCTCTAATGCACATGTCGTTAACGCTGACATTGAGCCAGCGATGGCAC

Basic information

species Physcomitrella patens
transcript PP1S178_112V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162187999|gb|FC364989.1|FC364989
EST:     ATTATACTTCTCCAGGAGCCATGACTCTGGATCATCACGTCACAATTGAG                         GAAATTCAAGAGTTTTTTGTGAAGTACATGGTAACTGACAGCCTGGGTGTA
genomic: ATTATACTTCTCCAGGAGCCATGACTCTGGATCATCACGTCACAATTGAGgcacaccttt ... ttgtatgcagGAAATTCAAGAGTTTTTTGTGAAGTACATGGTAACTGACAGCCTGGGTGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgggagatcatacttgatttaatcgcgacttaacggtgttcggttgtatgcagGAAATTCAAGAGTTTTTTGTGAAGTACATGGTAACTGACAGCCTGGGTGTAATCTCTAATGCACATGTCGTTAACGCTGACATTGAGCCAGCGATGGCAC
                             acttaac  putative branch site (score: 3)
           atacttgatttaat  TA-rich tract