1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtggcttttttccaaaaattattctgtatattttgttacattctcatgaattttggttcactgctattatacttatgttcaaagttaatccttcgatttttttgtttcctttctcttaccaggatgtcgccgtcctttcctctatgactgatgccatctcttgtcttgaggatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCGTGCGACAACAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCC
species | Physcomitrella patens |
transcript | PP1S175_129V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGT-GGATGTACEST: gi|162231926|gb|FC408792.1|FC408792
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTAC
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCGEST: gi|37836183|gb|BJ594191.1|BJ594191
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCG
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCGEST: gi|162223327|gb|FC400569.1|FC400569
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCG
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCGEST: gi|208395168|gb|DC915977.1|DC915977
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCG
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGNTGACACCGEST: gi|100437874|gb|BY961539.1|BY961539
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCG
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGNTTGC-AGGGTTTGCGTTGGATGTACCTTCCATTGTTGACAEST: gi|100353475|gb|BY964825.1|BY964825
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGG-TTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACA
EST: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAG TTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTC-ATTTGT-GACACC
genomic: CACTATGTATGCATTTGACGCTGCAGTGAACGGAGCTTCTGTCATCAAAGgtggcttttt ... gatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATT-GTTGACACC
gtcgccgtcctttcctctatgactgatgccatctcttgtcttgaggatttcgcagTTCCTAGGTTGCCAGGGTTTGCGTTGGATGTACCTTCCATTGTTGACACCGTGCGACAACAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCC
gactgat putative branch site (score: 3)