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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcttctccctgtgtgattgcacatcttcaatgaattttagctccatgcttgctgtcatcgtgtgaaatgtggaataaccatctgctcacatgttgtatttggttacttcacaagtgtttctaagaaagttctaaaatctggaatttttaattgttggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAACTGGACGGATGTGGCTCAGCGCTTTGAGAAAGCCTGATTGCAGCAAATTT

Basic information

species Physcomitrella patens
transcript PP1S174_60V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162260962|gb|FC438019.1|FC438019
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|208366209|gb|DC955308.1|DC955308
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTATAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|162235362|gb|FC412329.1|FC412329
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAANGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|208391751|gb|DC942313.1|DC942313
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAA
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAA
EST: gi|208397933|gb|DC916688.1|DC916688
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|208348700|gb|DC926375.1|DC926375
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|19789071|gb|BQ041074.1|BQ041074
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|37834392|gb|BJ592404.1|BJ592404
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|67570006|gb|BJ942830.1|BJ942830
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|37831305|gb|BJ589317.1|BJ589317
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|67693275|gb|BJ953508.1|BJ953508
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC
EST: gi|162235361|gb|FC412328.1|FC412328
EST:     TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAG                         TACAAGAACGTGAGGCCCGACTATTTGAAGAACATCTGGAAGGTTGTAAAC
genomic: TCGTTCCCTTACTTGGAATTGATGTCTGGGAACATGCCTACTACTTGCAGgtaaaatctt ... tggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaagtgtttctaagaaagttctaaaatctggaatttttaattgttggcaagtagTACAAGAACGTGAGGCCCGACTATCTGAAGAACATCTGGAAGGTTGTAAACTGGACGGATGTGGCTCAGCGCTTTGAGAAAGCCTGATTGCAGCAAATTT
                      taaaatctggaatttt  TA-rich tract