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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctccttcctcttgtagtatgctgttctcatttttgggctgtgtggtccactgctccaattgaagaaatattggcttaagcacggtattcgtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACCGATTGCTCAAAAAGTATGTTGTTGCGGAACCAGAAATTCAG

Basic information

species Physcomitrella patens
transcript PP1S174_123V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S174_123V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT5G24940.1 (Arabidopsis thaliana), 3'ss of exon 5
gctccttcctcttgtagtatgctgttctcatttttgggctgtgtggtccactgctccaattgaagaaatattggcttaagcacggtattcgt---ttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACCGATTGCTCAAAAAGTATGTTGTTGCGGAACCAGAAATTCAG
                              |     |     || |     |   ||  ||   |   ||||  |    |  |   | || |   |||  |||| |||||| | || || || ||||||||||| || || ||||||||||| |||||||| ||| | ||||||||||| || ||||||||||||
-----------------------------gtaacaagaaaccgtagagttatttcccgctttgtggcttattttccggtgtgcctaactcctagattgaacagGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCCCGCGCGTTTGGTGATCGATTGCTTAAACAATATGTTGTTGCTGATCCAGAAATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208395056|gb|DC920469.1|DC920469
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208378846|gb|DC927548.1|DC927548
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208396538|gb|DC915850.1|DC915850
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208366958|gb|DC951445.1|DC951445
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208352848|gb|DC917812.1|DC917812
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|162254449|gb|FC430662.1|FC430662
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208397850|gb|DC916171.1|DC916171
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208354531|gb|DC953881.1|DC953881
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208386007|gb|DC956523.1|DC956523
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|100412818|gb|BY992451.1|BY992451
EST:     GATGAACGACAACGCATTGAANAAGCTGGGAG-AGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GATGAACGACAACGCATTGAAAAAGCTGG-AGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208364824|gb|DC957875.1|DC957875
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|37852052|gb|BJ610060.1|BJ610060
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208354285|gb|DC957463.1|DC957463
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|100404154|gb|BY955282.1|BY955282
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|37834276|gb|BJ592288.1|BJ592288
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|208361054|gb|DC946687.1|DC946687
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
EST: gi|37832174|gb|BJ590186.1|BJ590186
EST:     GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG                         GCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC
genomic: GGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTGgtgagtatgt ... gtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccactgctccaattgaagaaatattggcttaagcacggtattcgtttgtccagGCACTTGGCGTGTAGGTGGCGTTCTTGCAGTCTCTCGGGCGTTTGGTGACCGATTGCTCAAAAAGTATGTTGTTGCGGAACCAGAAATTCAG
                                          ttcgttt  CT-rich tract
            aattgaagaaatatt  TA-rich tract