1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttgaattcccctcattgagtgtacattttgtctttcttgcaatacccttcttcgcaaaaattctaccatgtcattctcatcttatcaatgacaaatactctcaacctagacaagggctcttttgatctctacccttattcacatatgcgtggcatttctcttgtgtttgcagTATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAATCATTTGCAAAGAGGGGGGCTCTTGGTATTAAGGAAAAG
species | Physcomitrella patens |
transcript | PP1S16_326V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAG TATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAAEST: gi|37845246|gb|BJ603254.1|BJ603254
genomic: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAGgttgaattcc ... gtgtttgcagTATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAA
EST: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAG TATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAAEST: gi|208392176|gb|DC949580.1|DC949580
genomic: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAGgttgaattcc ... gtgtttgcagTATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAA
EST: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAG TATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAAEST: gi|208374828|gb|DC956101.1|DC956101
genomic: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAGgttgaattcc ... gtgtttgcagTATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAA
EST: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAG TATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAAEST: gi|67726239|gb|BJ976498.1|BJ976498
genomic: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAGgttgaattcc ... gtgtttgcagTATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAA
EST: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAG TATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAA
genomic: TATCAACACCAGAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAGgttgaattcc ... gtgtttgcagTATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAA
tcttttgatctctacccttattcacatatgcgtggcatttctcttgtgtttgcagTATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAATCATTTGCAAAGAGGGGGGCTCTTGGTATTAAGGAAAAG
ttttgat putative branch site (score: 5)
tttctcttgtgttt putative PPT
ttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaattcccctcattgagtgtacattttgtctttcttgcaatacccttcttcgcaaaaattctaccatgtcattctcatcttatcaatgacaaatactctcaacctagacaagggctcttttgatctctacccttattcacatatgcgtggcatttctcttgtgtttgcagTATTTACGAGACTACGCGACTTTTATGGGAACTGCTCGGTACTGGACTGAATCATTTGCAAAGAGGGGGGCTCTTGGTATTAAGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA