1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtatttcagtcatgagcttgtatattccttaacagtgaggagatttcaatattctggatgttactttgtggtgatcaatgggcttttattgctgagtttttgtgactaaatcttgtggagcattgcagGTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGAAACGAGTGGTTTTGTACTGGCTCAGCTGATAGAACCATCAAG
species | Physcomitrella patens |
transcript | PP1S169_73V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGG GTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGAEST: gi|162266559|gb|FC442790.1|FC442790
genomic: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGGgtaagtattt ... agcattgcagGTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGA
EST: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGG GTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGAEST: gi|162160839|gb|FC337661.1|FC337661
genomic: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGGgtaagtattt ... agcattgcagGTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGA
EST: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGG GTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGAEST: gi|162183681|gb|FC359909.1|FC359909
genomic: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGGgtaagtattt ... agcattgcagGTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGA
EST: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGG GTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGAEST: gi|162198130|gb|FC373080.1|FC373080
genomic: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGGgtaagtattt ... agcattgcagGTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGA
EST: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGG GTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGA
genomic: CAAGTAAATGGCCAAAGCCTGTCTGGCATCCACCTTGGGTAAACTACAGGgtaagtattt ... agcattgcagGTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGA
atcaatgggcttttattgctgagtttttgtgactaaatcttgtggagcattgcagGTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGAAACGAGTGGTTTTGTACTGGCTCAGCTGATAGAACCATCAAG
gactaaa putative branch site (score: 2)
ttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatttcagtcatgagcttgtatattccttaacagtgaggagatttcaatattctggatgttactttgtggtgatcaatgggcttttattgctgagtttttgtgactaaatcttgtggagcattgcagGTCATCAGTGGGCATTTAGGGTGGGTGCGATCAATAGCATTTGATCCTGGAAACGAGTGGTTTTGTACTGGCTCAGCTGATAGAACCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT