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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctctccgcttgcagtttgcggttcatattcgctgggggtgatctgccacctggtatggctatgtgacctttgtccgaccgactcatgttctcagttttgtagttgtaacgtgtgtagaagaacaaaagtcttcttttctaacgactcggcctcctctttgcagTCCAAACCCGCACTCCCCGCGTTGGAGCGCTTGGTCCATTCCACCGATGAAGAGGTCCTGACTGATGCGTGCTGGGCTCTCTCTTACTTGTCCGATGGGA

Basic information

species Physcomitrella patens
transcript PP1S165_51V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S165_51V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os05g06350.1 (Oryza sativa), 3'ss of exon 5
gtagctctccgcttgcagtttgcggttcatattcgctgggggtgatctgccacctggtatggctatgtgacctttgtccgaccgactcatgttctcagttttgtagttgtaacgtgtgtagaagaacaaaagtcttcttttctaacgactcggcctcctctttgcagTCCAAACCCGCACTCCCCGCGTTGGAGCGCTTGGTCCATTCCACCGATGAAGAGGTCCTGACTGATGCGTGCTGGGCTCTCTCTTACTTGTCCGATGGGA
                                                                           ||   |        |    ||   ||||  |   | || |  ||     | ||  ||  |  |||| |   || |     |  ||   ||||  |||||| || ||  | ||  || ||||| |  |||||||    || || ||||||||||||||||| ||||||||||| ||||| ||||| ||||| |
---------------------------------------------------------------------------gtttaattctgggctaccttctactttgatgcactgacctaagttttt-atcattaggatggttttgt--tgattttttgtgttcga-gcagGTCAAACCAGCGCTTTCTGCACTGCAGCGCCTCATCCATTCTCAGGACGAGGAGGTCCTGACTGATGCCTGCTGGGCTCTTTCTTATTTGTCTGATGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgtgtagaagaacaaaagtcttcttttctaacgactcggcctcctctttgcagTCCAAACCCGCACTCCCCGCGTTGGAGCGCTTGGTCCATTCCACCGATGAAGAGGTCCTGACTGATGCGTGCTGGGCTCTCTCTTACTTGTCCGATGGGA
                           ttctaac  putative branch site (score: 1)
                                    ctcggcctcctcttt  putative PPT
                         ttttctaa  TA-rich tract