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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctctccgcttgcagtttgcggttcatattcgctgggggtgatctgccacctggtatggctatgtgacctttgtccgaccgactcatgttctcagttttgtagttgtaacgtgtgtagaagaacaaaagtcttcttttctaacgactcggcctcctctttgcagTCCAAACCCGCACTCCCCGCGTTGGAGCGCTTGGTCCATTCCACCGATGAAGAGGTCCTGACTGATGCGTGCTGGGCTCTCTCTTACTTGTCCGATGGGA

Basic information

species Physcomitrella patens
transcript PP1S165_51V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S165_51V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os05g06350.1 (Oryza sativa), 3'ss of exon 5
gtagctctccgcttgcagtttgcggttcatattcgctgggggtgatctgccacctggtatggctatgtgacctttgtccgaccgactcatgttctcagttttgtagttgtaacgtgtgtagaagaacaaaagtcttcttttctaacgactcggcctcctctttgcagTCCAAACCCGCACTCCCCGCGTTGGAGCGCTTGGTCCATTCCACCGATGAAGAGGTCCTGACTGATGCGTGCTGGGCTCTCTCTTACTTGTCCGATGGGA
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---------------------------------------------------------------------------gtttaattctgggctaccttctactttgatgcactgacctaagttttt-atcattaggatggttttgt--tgattttttgtgttcga-gcagGTCAAACCAGCGCTTTCTGCACTGCAGCGCCTCATCCATTCTCAGGACGAGGAGGTCCTGACTGATGCCTGCTGGGCTCTTTCTTATTTGTCTGATGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgtgtagaagaacaaaagtcttcttttctaacgactcggcctcctctttgcagTCCAAACCCGCACTCCCCGCGTTGGAGCGCTTGGTCCATTCCACCGATGAAGAGGTCCTGACTGATGCGTGCTGGGCTCTCTCTTACTTGTCCGATGGGA
                           ttctaac  putative branch site (score: 1)
 ctcggcctcctcttt  putative PPT
 ttttctaa  TA-rich tract