1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacaatttaagaacatgcataggaaagatccagcttcgttttaccccttatcaattctggtatgttagaactaagacatgcaaattgattgctcttacagAACCACACGGATGTGATGGTAGTAGTTGACCCCGATGATTACCCAGAAGTTCTAGCAAAGCTTCAAAAAGGTGATGATAGTAGCATCAGCTTCCGAAGAA
species | Physcomitrella patens |
transcript | PP1S160_136V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAACATCGACATTGGAGGTCCATCTATGATTAGAGCTGCCGCAAAG AACCACACGGATGTGATGGTAGTAGTTGACCCCTATGATTACCCAGAAGTTEST: gi|162222462|gb|FC397196.1|FC397196
genomic: TTGAGAACATCGACATTGGAGGTCCATCTATGATTAGAGCTGCCGCAAAGgtaaggtacg ... gctcttacagAACCACACGGATGTGATGGTAGTAGTTGACCCCGATGATTACCCAGAAGTT
EST: TTGAGAACATCGACATTGGAGGTCCATCTATGATTAGAGCTGCCGCAAAG AACCACACGGATGTGATGGTAGTAGTTGACCCCGATGATTACCCAGAAGTTEST: gi|162257625|gb|FC433759.1|FC433759
genomic: TTGAGAACATCGACATTGGAGGTCCATCTATGATTAGAGCTGCCGCAAAGgtaaggtacg ... gctcttacagAACCACACGGATGTGATGGTAGTAGTTGACCCCGATGATTACCCAGAAGTT
EST: TTGAGAACATCGACATTGGAGGTCCATCTATGATTAGAGCTGCCGCAAAG AACCACACGGATGTGATGGTAGTAGTTGACCCCGATGATTACCCAGAAGTT
genomic: TTGAGAACATCGACATTGGAGGTCCATCTATGATTAGAGCTGCCGCAAAGgtaaggtacg ... gctcttacagAACCACACGGATGTGATGGTAGTAGTTGACCCCGATGATTACCCAGAAGTT
ccttatcaattctggtatgttagaactaagacatgcaaattgattgctcttacagAACCACACGGATGTGATGGTAGTAGTTGACCCCGATGATTACCCAGAAGTTCTAGCAAAGCTTCAAAAAGGTGATGATAGTAGCATCAGCTTCCGAAGAA
aattgat putative branch site (score: 4)
ttgctctt CT-rich tract
aaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaatttaagaacatgcataggaaagatccagcttcgttttaccccttatcaattctggtatgttagaactaagacatgcaaattgattgctcttacagAACCACACGGATGTGATGGTAGTAGTTGACCCCGATGATTACCCAGAAGTTCTAGCAAAGCTTCAAAAAGGTGATGATAGTAGCATCAGCTTCCGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - -aacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacatgc