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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctaatgggatgatttatgacgtaaggttcagaaagtacttctagatcttgtatctggtcaattgtagataattacctgactgttgattttttatacagTTAAATGGAGCTGGGATTCAGCATGTAGGTATTTACAGTCCGATGCATTCAATGAACAAG

Basic information

species Physcomitrella patens
transcript PP1S15_94V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100421954|gb|BY957797.1|BY957797
EST:     CGATTGTTTTTTCTCAATTTCTTGAACACATTAATGTGATAGAGGAACAG                         TTAAATGGAGCTGGGATTCAGCATGTAGGTATTTACAGTCCGATGCATTCA
genomic: CGATTGTTTTTTCTCAATTTCTTGAACACATTAATGTGATAGAGGAACAGgttgggcttc ... ttttatacagTTAAATGGAGCTGGGATTCAGCATGTAGGTATTTACAGTCCGATGCATTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcttgtatctggtcaattgtagataattacctgactgttgattttttatacagTTAAATGGAGCTGGGATTCAGCATGTAGGTATTTACAGTCCGATGCATTCAATGAACAAG
                                           ttttttat  CT-rich tract
                aattgtagataatta  TA-rich tract