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gtaagaatacattgaccttccattcgttttttgaaagcgctgatctagtgctatatgtttgaaaacggagcgcacgaaagtaacgtccacttatgaacttcaaatttttatatgcagAGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTTCACGACGGCGTGCATAAAGATGAACCGTCCAGATCTCGCAGAGAGGGCC
species | Physcomitrella patens |
transcript | PP1S15_44V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTACAGAAGACGAGTGGCGCATCATCACCGGAGCTGACCCTAAGAACAC AGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTTEST: gi|162195527|gb|FC371828.1|FC371828
genomic: CTTACAGAAGACGAGTGGCGCATCATCACCGGAGCTGACCCTAAGAACACgtaagaatac ... ttatatgcagAGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTT
EST: CTTACAGAAGACGAGTGGCGCATCATCACCGGAGCTGACCCTAAGAACAC AGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTTEST: gi|208364913|gb|DC947055.1|DC947055
genomic: CTTACAGAAGACGAGTGGCGCATCATCACCGGAGCTGACCCTAAGAACACgtaagaatac ... ttatatgcagAGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTT
EST: CTTACAGAAGACGAGTGGCGCATCATCACCGGAGCTGACCCTAAGAACAC AGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTTEST: gi|162153282|gb|FC329064.1|FC329064
genomic: CTTACAGAAGACGAGTGGCGCATCATCACCGGAGCTGACCCTAAGAACACgtaagaatac ... ttatatgcagAGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTT
EST: CTTACAGAAGACGAGTGGCGCATCATCACCGGAGCTGACCCTAAGAACAC AGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTT
genomic: CTTACAGAAGACGAGTGGCGCATCATCACCGGAGCTGACCCTAAGAACACgtaagaatac ... ttatatgcagAGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTT
aaacggagcgcacgaaagtaacgtccacttatgaacttcaaatttttatatgcagAGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTTCACGACGGCGTGCATAAAGATGAACCGTCCAGATCTCGCAGAGAGGGCC
aagtaac putative branch site (score: 3)
tttttat putative PPT
ttatgaacttcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatacattgaccttccattcgttttttgaaagcgctgatctagtgctatatgtttgaaaacggagcgcacgaaagtaacgtccacttatgaacttcaaatttttatatgcagAGCTTGGTCTTACCACAACGGAGGGTCATGGCCTACTCTTCTGTGGCAGTTCACGACGGCGTGCATAAAGATGAACCGTCCAGATCTCGCAGAGAGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG