1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtcctgatactgcactgaagttcttgatttgcgtgcttcatacattgttctgttctttctaatagctaactctgctactctgcgaaaacaagattatgtgctaaactgtatcgttgaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGTATTTGTGTATCGGGAGATTCTCTGCAGTCACATTCCAG
species | Physcomitrella patens |
transcript | PP1S15_388V6.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|67699821|gb|BJ960054.1|BJ960054
genomic: CTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|162262230|gb|FC437141.1|FC437141
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|162244248|gb|FC420978.1|FC420978
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|37839052|gb|BJ597060.1|BJ597060
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: ATGGCCGCAACATTTTGGACTATTCNTACAGCATGGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|37850347|gb|BJ608355.1|BJ608355
genomic: ATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|67693024|gb|BJ953257.1|BJ953257
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: GCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|37823729|gb|BJ581795.1|BJ581795
genomic: GCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCNTCAATGGCCGCAACATTTTGGACTATTCTTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|208366176|gb|DC955277.1|DC955277
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|162214631|gb|FC390662.1|FC390662
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|67569756|gb|BJ942580.1|BJ942580
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: CATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|18335982|gb|BJ168003.1|BJ168003
genomic: CATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|37843863|gb|BJ601871.1|BJ601871
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCNTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGEST: gi|19788745|gb|BQ040893.1|BQ040893
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
EST: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTG ATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
genomic: TCCTCAATGGCCGCAACATTTTGGACTATTCCTACAGCATTGGAGCTGTGgtaagtcctg ... gaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAG
tctgctactctgcgaaaacaagattatgtgctaaactgtatcgttgaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGTATTTGTGTATCGGGAGATTCTCTGCAGTCACATTCCAG
aagattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctgatactgcactgaagttcttgatttgcgtgcttcatacattgttctgttctttctaatagctaactctgctactctgcgaaaacaagattatgtgctaaactgtatcgttgaccctgcagATGTTTATATTGCTCTCATGCGTTCTTGCTGTATTCTGCAACATCAGCCAGTATTTGTGTATCGGGAGATTCTCTGCAGTCACATTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG