1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accgagtaataatgaaatgacaaggactacatcaaatcttcacactgctagttaaagtctacagattcactgagtggataataaaaccccacttctgcagGGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTTCTCTGGGAAAGCCGTCGTTGAGAAACTGGAAGAGCAAGACTATCGATTC
species | Physcomitrella patens |
transcript | PP1S158_112V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGTCTTTATGGTCTCGTGACATTGAGGACGAAATTGTTCCCGTCTGCAG GGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTTEST: gi|162259130|gb|FC436424.1|FC436424
genomic: TGGTCTTTATGGTCTCGTGACATTGAGGACGAAATTGTTCCCGTCTGCAGgtaattgtaa ... acttctgcagGGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTT
EST: TGGTCTTTATGGTCTCGTGACATTGAGGACGAAATTGTTCCCGTCTGCAG GGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTTEST: gi|37834228|gb|BJ592240.1|BJ592240
genomic: TGGTCTTTATGGTCTCGTGACATTGAGGACGAAATTGTTCCCGTCTGCAGgtaattgtaa ... acttctgcagGGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTT
EST: TGGTCTTTATGGTCTCGTGACATTGAGGACGAAATTGTTCCCGTCTGCAG GGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTT
genomic: TGGTCTTTATGGTCTCGTGACATTGAGGACGAAATTGTTCCCGTCTGCAGgtaattgtaa ... acttctgcagGGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTT
tgctagttaaagtctacagattcactgagtggataataaaaccccacttctgcagGGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTTCTCTGGGAAAGCCGTCGTTGAGAAACTGGAAGAGCAAGACTATCGATTC
ccccacttct CT-rich tract
ataataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgagtaataatgaaatgacaaggactacatcaaatcttcacactgctagttaaagtctacagattcactgagtggataataaaaccccacttctgcagGGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTTCTCTGGGAAAGCCGTCGTTGAGAAACTGGAAGAGCAAGACTATCGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA