Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttagagaaaccacgtgcattcgaagatcacacaaacagaccaatgctaccattgttcgaattggtattcattatggttagtgttgtattgttatggcagGAGATTGCACATCGTCAGCAATTTTACTTCTGGAAACACTACAGGAATAACAGGTTGAAACAAATACTGCCTCGCCCCTTACCGGAAGCACCTGCTCCAC

Basic information

species Physcomitrella patens
transcript PP1S149_14V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S149_14V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G139683_T03 (Zea mays), 3'ss of exon 4
tttagagaaaccacgtgcattcgaagatcacacaaacagaccaatgctacca-ttgttcgaattggtattca--ttatggttagtgttgtattgttatggcagGAGATTGCACATCGTCAGCAATTTTACTTCTGGAAACACTACAGGAATAACAGGTTGAAACAAATACTGCCTCGCCCCTTACCGGAAGCACCTGCTCCAC
  |  |      |      ||   |  |        ||   |  |  ||  | ||      ||| |||   |  | |    ||       |||||| || |||||| |||| ||| | ||||||| || |||||||||| ||||||||||||||||  |||| || ||  | || |||||    || ||| |  |  || |||
--tgcattgtttataaattttaataattttacttttcatcgctcttttattaattaagactatttgtaagaaactgacacctaccaactaattgtt-tgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACAGACTGAAGCACATCATACCGCGCCCTCCTCCTGAACCTGCACCTTCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaccattgttcgaattggtattcattatggttagtgttgtattgttatggcagGAGATTGCACATCGTCAGCAATTTTACTTCTGGAAACACTACAGGAATAACAGGTTGAAACAAATACTGCCTCGCCCCTTACCGGAAGCACCTGCTCCAC
                    tattcattat  TA-rich tract