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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagcataatggcatcacgtttttggctgagcaggtgagcttcgtgtatgacagGTGAGCCACCATCCGCCAATGAGTTCTGCTCATGCAGAGAATGAACATTTCTCTTACGACATCACATCAAAGTTGAGGACAAAGTTTCTTGGCAACTCTG

Basic information

species Physcomitrella patens
transcript PP1S148_87V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S148_87V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------------------------gtgaagcataatggcatcacgtttttggctgagc-aggtgagcttcgtgta---tgacagGTGAGCCACCATCCGCCAATGAGTTCTGCTCATGCAGAGAATGAACATTTCTCTTACGACATCACATCAAAGTTGAGGACAAAGTTTCTTGGCAACTCTG
                                            | |  |  |||    |||  | ||||  | |   |    |  ||  ||||   |  ||||| ||||| ||||| ||||||||| ||| |||||| ||||| || || |||  |||||||||||||||||||||||  || ||  || | || |||||||
gtgcggctatacatctcattgttactcacatagtggataatgactaattcgcaataa-gtcatatatttgtttcatttataataagttactgtaatttttcagGTTAGCCATCATCCACCAATGAGTGCTGGTCATGCCGAGAACGAGCACTTCATTTACGACATCACATCAAAGTTGAAAACTAAACTTTTGGGTAACTCTG

upper sequence: PP1S148_87V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 3'ss of exon 5
--------------------------------------------gtgaagcataatggcatcacgtttttggctgagcaggtgagcttcgtgtatgacagGTGAGCCACCATCCGCCAATGAGTTCTGCTCATGCAGAGAATGAACATTTCTCTTACGACATCACATCAAAGTTGAGGACAAAGTTTCTTGGCAACTCTG
                                             |    |||| | | | |   || |    |         |     |    |  ||| | || || || || ||||| ||| |||| ||||| || ||||| |||||| |||| || |||||||||||||||| ||| || ||| | || |||||  
gtaatatccagtatatctgtatgatttttcagtatccaatcacacttctacatagtagtacctaattctgcaatccttcacaaattcctgctcctttcagATTAGTCATCACCCTCCAATCAGTGCTGCACATGCTGAAAATGAGCATTTCGCTTATGATATCACATCAAAGTTGAAGACCAAATTTTTAGGAAACTCGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagcataatggcatcacgtttttggctgagcaggtgagcttcgtgtatgacagGTGAGCCACCATCCGCCAATGAGTTCTGCTCATGCAGAGAATGAACATTTCTCTTACGACATCACATCAAAGTTGAGGACAAAGTTTCTTGGCAACTCTG
      ataat  TA-rich tract