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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagtagtcctaccatctactccatttgtagagttaactgttctgtatggtccatgatgaatttgctaagttgaatgtaatgtgttcatattgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG

Basic information

species Physcomitrella patens
transcript PP1S147_62V6.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S147_62V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ32791 (Selaginella moellendorffii), 3'ss of exon 5
ctagtagtcctaccatctactccatttgtagagttaactgttctgtatggtccatgatgaatttgctaagttgaatgtaatgtgttcatattgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG
                                            |||   |         || | ||    |||| | |   | |  ||  | |    ||||||| || |  || || || |  ||  |  || |||| || ||||||||||||||||||||||| || || ||||||||||| |||||||
--------------------------------------------gtaactttagcagccgatattct----tgaaagcataat-tgtatcgtatctccagGAGGATTTCAAACCAATCTTGAAGGAGCTTTTGATGACTCACCGCGGTTTGGAATTTCTTCATGACACTCCTGAGTTTCAAGAAAGATATG

upper sequence: PP1S147_62V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ20642 (Selaginella moellendorffii), 3'ss of exon 5
ctagtagtcctaccatctactccatttgtagagttaactgttctgtatggtccatgatgaatttgctaagttgaatgtaatgtgttcatattgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG
                                            |||   |         || | ||    |||| | |   | |  ||  | |    ||||||| || |  || || || |  ||  |  || |||| || ||||||||||||||||||||||| || || ||||||||||| |||||||
--------------------------------------------gtaactttagcagccgatatcct----tgaaagcataat-tgtatcgtatctccagGAGGATTTCAAACCAATCTTGAAGGAGCTTTTGATGACTCACCGCGGTTTGGAATTTCTTCATGACACTCCTGAGTTTCAAGAAAGATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193203|gb|FC369963.1|FC369963
EST:     CTCGCATTTTTACTATTTTGAAGCAAACTGACAAGAATTTCCTCAGACAG                         GAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTG
genomic: CTCGCATTTTTACTATTTTGAAGCAAACTGACAAGAATTTCCTCAGACAGgtttgtctga ... ttgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggtccatgatgaatttgctaagttgaatgtaatgtgttcatattgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG
           atgaattt  TA-rich tract