Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacttcaatttcgggttttttttctcttttctctatcacgtaaaaataaacaatttaggcctttgttggcgcattaaatctggctgtttcacttaactgtattttcaattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATATGATGCGTGGAATATAAGAGAGCCTGTTGTACCAAGCTTTGCAGTATAA

Basic information

species Physcomitrella patens
transcript PP1S145_172V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162238847|gb|FC415063.1|FC415063
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAAC
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAAC
EST: gi|67694521|gb|BJ954754.1|BJ954754
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67696117|gb|BJ956350.1|BJ956350
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67691415|gb|BJ951648.1|BJ951648
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162269965|gb|FC445950.1|FC445950
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162228490|gb|FC404439.1|FC404439
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67691644|gb|BJ951877.1|BJ951877
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|37845013|gb|BJ603021.1|BJ603021
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162211571|gb|FC387651.1|FC387651
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162203876|gb|FC379973.1|FC379973
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162271424|gb|FC446997.1|FC446997
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208400845|gb|DC925125.1|DC925125
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67719795|gb|BJ970054.1|BJ970054
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGA
EST: gi|162233317|gb|FC410166.1|FC410166
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162250093|gb|FC427402.1|FC427402
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67725090|gb|BJ975349.1|BJ975349
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGCCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67720967|gb|BJ971226.1|BJ971226
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208400303|gb|DC924941.1|DC924941
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162279440|gb|FC455556.1|FC455556
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|18339234|gb|BJ171261.1|BJ171261
EST:     CAGCAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAA
EST: gi|67720314|gb|BJ970573.1|BJ970573
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGTATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67722841|gb|BJ973100.1|BJ973100
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67719242|gb|BJ969501.1|BJ969501
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGG
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGG
EST: gi|67722532|gb|BJ972791.1|BJ972791
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162201724|gb|FC378009.1|FC378009
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|18339079|gb|BJ171105.1|BJ171105
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGC
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGC
EST: gi|19785304|gb|BQ040299.1|BQ040299
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|7207663|gb|AW561661.1|AW561661
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67691502|gb|BJ951735.1|BJ951735
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162214898|gb|FC390458.1|FC390458
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|18333807|gb|BJ165823.1|BJ165823
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67727051|gb|BJ977310.1|BJ977310
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162187883|gb|FC364457.1|FC364457
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162264816|gb|FC440383.1|FC440383
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208368468|gb|DC955121.1|DC955121
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|37821885|gb|BJ579951.1|BJ579951
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67721258|gb|BJ971517.1|BJ971517
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67691783|gb|BJ952016.1|BJ952016
EST:     CAACAACGGGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67720948|gb|BJ971207.1|BJ971207
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67578836|gb|BJ951003.1|BJ951003
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|37833873|gb|BJ591885.1|BJ591885
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGGCGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|37822505|gb|BJ580571.1|BJ580571
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGGCGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67727897|gb|BJ978156.1|BJ978156
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208388745|gb|DC953479.1|DC953479
EST:     CAACAACGAGTGCATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162238846|gb|FC415062.1|FC415062
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67721886|gb|BJ972145.1|BJ972145
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67694172|gb|BJ954405.1|BJ954405
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162242217|gb|FC414504.1|FC414504
EST:     CCACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67726080|gb|BJ976339.1|BJ976339
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162150267|gb|FC326352.1|FC326352
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208366541|gb|DC954849.1|DC954849
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162187884|gb|FC364458.1|FC364458
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67720533|gb|BJ970792.1|BJ970792
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|19789701|gb|BQ041460.1|BQ041460
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208368791|gb|DC943791.1|DC943791
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162246443|gb|FC419953.1|FC419953
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208373606|gb|DC952431.1|DC952431
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67723340|gb|BJ973599.1|BJ973599
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67718332|gb|BJ968591.1|BJ968591
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAAAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67727204|gb|BJ977463.1|BJ977463
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162159085|gb|FC334880.1|FC334880
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208365251|gb|DC950750.1|DC950750
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|19785001|gb|BQ040256.1|BQ040256
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162273132|gb|FC447826.1|FC447826
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162260084|gb|FC435803.1|FC435803
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162198734|gb|FC374217.1|FC374217
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162233318|gb|FC410167.1|FC410167
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162191529|gb|FC368455.1|FC368455
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67726823|gb|BJ977082.1|BJ977082
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67700856|gb|BJ961089.1|BJ961089
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162213214|gb|FC389294.1|FC389294
EST:     AACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTNCA-CAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: AACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTT-CAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|6166824|gb|AW145088.1|AW145088
EST:     CAACATCGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGCGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162159086|gb|FC334881.1|FC334881
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCCACAAGATAT                         AGACGAGAATAAC
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAAC
EST: gi|162242216|gb|FC414503.1|FC414503
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162269951|gb|FC445949.1|FC445949
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162225885|gb|FC402177.1|FC402177
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162219985|gb|FC395357.1|FC395357
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67692310|gb|BJ952543.1|BJ952543
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|37821809|gb|BJ579875.1|BJ579875
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162198735|gb|FC374218.1|FC374218
EST:     AACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTNCA-CAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: AACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTT-CAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|18339509|gb|BJ171536.1|BJ171536
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|37849865|gb|BJ607873.1|BJ607873
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67722859|gb|BJ973118.1|BJ973118
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67700888|gb|BJ961121.1|BJ961121
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162279441|gb|FC455557.1|FC455557
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162228489|gb|FC404438.1|FC404438
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67727543|gb|BJ977802.1|BJ977802
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67699598|gb|BJ959831.1|BJ959831
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|208366486|gb|DC954822.1|DC954822
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|37823537|gb|BJ581603.1|BJ581603
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|100404022|gb|BY955216.1|BY955216
EST:     AACAACGAGTACATTCAGTCTTGTGACATTGTTTGCCTTCA-CAAGATAT                         AGACGAGAATAACTTCG
genomic: AACAACGAGTACATTCAGTCTTGTGACATTGTT-GCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCG
EST: gi|162260083|gb|FC435802.1|FC435802
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162150268|gb|FC326353.1|FC326353
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|162218815|gb|FC394358.1|FC394358
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67699091|gb|BJ959324.1|BJ959324
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
EST: gi|67722901|gb|BJ973160.1|BJ973160
EST:     CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATAT                         AGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA
genomic: CAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 33 (downstream exon)
Score: 5

GACCTCGTCAGTATCGACAACCTGATTGAGGACCATCTGACCTCCGAGCCCAACAACGAGTACATTCAGTCTTGTGACATTGTTGCCTTCAACAAGATATgtaagtactt ... aattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATATGATGCGTGGAATATAAGAGAGCCTGTTGTACCAAGCTTTGCAGTATAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttggcgcattaaatctggctgtttcacttaactgtattttcaattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATATGATGCGTGGAATATAAGAGAGCCTGTTGTACCAAGCTTTGCAGTATAA
                             acttaac  putative branch site (score: 5)
                                    tgtattttcaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtacttcaatttcgggttttttttctcttttctctatcacgtaaaaataaacaatttaggcctttgttggcgcattaaatctggctgtttcacttaactgtattttcaattttgcagAGACGAGAATAACTTCGGGTGATAGTGGGAGCGTCGCTGCTATATTATATATGATGCGTGGAATATAAGAGAGCCTGTTGTACCAAGCTTTGCAGTATAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT