1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tggagccttcatgaactgaccatctagtttagggtctatcttggtttgagttaaggttatcaagcactggtaatgtttggatcttctggactctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGCACTGTCGCATGTCTATAGCATGGAAATTAGATATTTGTCCGGTCATCA
species | Physcomitrella patens |
transcript | PP1S142_132V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|162236289|gb|FC412032.1|FC412032
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|208396434|gb|DC920086.1|DC920086
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|67700500|gb|BJ960733.1|BJ960733
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: CATCGGACACTCAAT GGATCTATACGCCTCATACATTTGTGGAGAGCTTGCGCCAGTAGGAGCCCGEST: gi|208381293|gb|DC919183.1|DC919183
genomic: CATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACA-TTGTGGAGAGCTTGCGCCAGTAGGAGCCCG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|162259318|gb|FC436209.1|FC436209
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|18336071|gb|BJ168093.1|BJ168093
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|162264798|gb|FC440365.1|FC440365
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|208380290|gb|DC922712.1|DC922712
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|208400875|gb|DC925155.1|DC925155
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|162185627|gb|FC361520.1|FC361520
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|18332900|gb|BJ164913.1|BJ164913
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|67698989|gb|BJ959222.1|BJ959222
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGEST: gi|162186520|gb|FC363284.1|FC363284
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
EST: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAAT GGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
genomic: GATGAGTTCCTCGGCCATGAAGCCGCGATCGACGCCATCGGACACTCAATgtatgtcaac ... ctctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGG
ttgagttaaggttatcaagcactggtaatgtttggatcttctggactctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGCACTGTCGCATGTCTATAGCATGGAAATTAGATATTTGTCCGGTCATCA
ctctttgc CT-rich tract
taatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggagccttcatgaactgaccatctagtttagggtctatcttggtttgagttaaggttatcaagcactggtaatgtttggatcttctggactctttgcagGGATCTATACGCCTCATACATTGTGGAGAGCTTGCGCCAGTAGGAGCCCGGCACTGTCGCATGTCTATAGCATGGAAATTAGATATTTGTCCGGTCATCA
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