1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatagtgaattgctctgttccttttgttcctctactaattccgaatttctctgagcactgagatcagtccatttttttatttacggcgtccctgatttctctgccttatcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACCTTTGCTGGACCGAAGTACAAAATTTTATCTTGTAGTTGAGGGCAACTAG
species | Physcomitrella patens |
transcript | PP1S13_423V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATCACAAGTCTTCGGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACG CTGTTGCAGGCTTGTGGAACAGATGNTGAGCCATTCATTGGCGAATTCACCEST: gi|208360974|gb|DC946649.1|DC946649
genomic: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACGgtaatagtga ... tcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACC
EST: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACG CTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACCEST: gi|37831722|gb|BJ589734.1|BJ589734
genomic: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACGgtaatagtga ... tcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACC
EST: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACG CTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACCEST: gi|208354753|gb|DC918723.1|DC918723
genomic: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACGgtaatagtga ... tcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACC
EST: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACG CTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACCEST: gi|208358562|gb|DC946523.1|DC946523
genomic: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACGgtaatagtga ... tcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACC
EST: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACG CTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACCEST: gi|67694217|gb|BJ954450.1|BJ954450
genomic: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACGgtaatagtga ... tcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACC
EST: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACG CTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACC
genomic: GATCACAAGTCTTCAGTGTTGACGCTTTGTCTGCTCTGCCCACACAAACGgtaatagtga ... tcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACC
tcagtccatttttttatttacggcgtccctgatttctctgccttatcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACCTTTGCTGGACCGAAGTACAAAATTTTATCTTGTAGTTGAGGGCAACTAG
ccctgat putative branch site (score: 10)
tttctctgccttatc CT-rich tract
atttttttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagtgaattgctctgttccttttgttcctctactaattccgaatttctctgagcactgagatcagtccatttttttatttacggcgtccctgatttctctgccttatcatgtgcagCTGTTGCAGGCTTGTGGAACAGATGCTGAGCCATTCATTGGCGAATTCACCTTTGCTGGACCGAAGTACAAAATTTTATCTTGTAGTTGAGGGCAACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA