1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agatgccgccgatgtaatgtgtgctggattgtgattggctcggtctcaacagtttgctcttttcgtttgtatttgagacattggtttaatttctttgcagGTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAA
species | Physcomitrella patens |
transcript | PP1S13_419V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: NCCTTCTGGCGCGAGCAA-TGCTAGCAATANTGATGCTAATTTCTTAAAA GTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTTEST: gi|37853467|gb|BJ611475.1|BJ611475
genomic: CCCTTCTGGCGCGAGCAATTGCTAGCAATATTGATGCTAATTTCTTAAAAgtacgaggtc ... ttctttgcagGTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTT
EST: GCAATTGCTAGCAATATTGATGCTAATTTCTTAAAA GTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTT
genomic: GCAATTGCTAGCAATATTGATGCTAATTTCTTAAAAgtacgaggtc ... ttctttgcagGTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTT
tcaacagtttgctcttttcgtttgtatttgagacattggtttaatttctttgcagGTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAA
gtttaat putative branch site (score: 3)
tttctttgc CT-rich tract
tttaatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgccgccgatgtaatgtgtgctggattgtgattggctcggtctcaacagtttgctcttttcgtttgtatttgagacattggtttaatttctttgcagGTGGTTTCTAGTGCGATTGTGGATAAGTACATTGGAGAAAGTGCGAGACTTATTAGGGAGATGTTTAGTTACGCCCGTGACCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - -tgctgga