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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caccatggcccctccttttgtttctttacgttccaatttcttcataatctagacaattattcttggttcacgacttatgtatttatttatccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG

Basic information

species Physcomitrella patens
transcript PP1S138_84V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162250887|gb|FC425709.1|FC425709
EST:     TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGG                         GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
genomic: TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGGgtatactatt ... ccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
EST: gi|162190026|gb|FC366600.1|FC366600
EST:     TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGG                         GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
genomic: TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGGgtatactatt ... ccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
EST: gi|37834545|gb|BJ592557.1|BJ592557
EST:     TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGG                         GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
genomic: TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGGgtatactatt ... ccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
EST: gi|37825557|gb|BJ583623.1|BJ583623
EST:     TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGG                         GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
genomic: TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGGgtatactatt ... ccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
EST: gi|162190025|gb|FC366599.1|FC366599
EST:     TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGG                         GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
genomic: TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGGgtatactatt ... ccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
EST: gi|67696545|gb|BJ956778.1|BJ956778
EST:     TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGG                         GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
genomic: TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGGgtatactatt ... ccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
EST: gi|37822604|gb|BJ580670.1|BJ580670
EST:     TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGG                         GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
genomic: TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGGgtatactatt ... ccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
EST: gi|67694612|gb|BJ954845.1|BJ954845
EST:     TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGG                         GCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA
genomic: TATGGAACCATTTCTTCGCAAGCAAGGAATGCCTGTTCGTCTTAACAGGGgtatactatt ... ccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctagacaattattcttggttcacgacttatgtatttatttatccttgagcagGCGTTGTAGAGCTTGTTGCGGACTATACTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG
                                        tttatcctt  CT-rich tract
                           acttatgtatttattt  TA-rich tract