1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acctttctggatcctgatagagctgtgatgttagcagtagattatgcatatggttcatatatataactcattaacagtcttacaatctggcatgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGTTCAAAGGCAGTGCAGATGACTTTGCCACTGGTGGTACCGGTGGTATTG
species | Physcomitrella patens |
transcript | PP1S138_36V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAG AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGEST: gi|162213005|gb|FC389221.1|FC389221
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAG AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGEST: gi|162170163|gb|FC347283.1|FC347283
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAG AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGEST: gi|162186685|gb|FC363657.1|FC363657
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAG AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGEST: gi|162154476|gb|FC330478.1|FC330478
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAT AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGEST: gi|162262409|gb|FC439673.1|FC439673
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAG AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGEST: gi|162171931|gb|FC349029.1|FC349029
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAG AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGEST: gi|162179642|gb|FC355700.1|FC355700
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAG AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGEST: gi|162230691|gb|FC406114.1|FC406114
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
EST: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAG AGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
genomic: TCATGGTAACATACAGCAGTCATGAACCCAGCAACCCAAGGGACACTCAGgtgtgtataa ... catgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAG
gcatatggttcatatatataactcattaacagtcttacaatctggcatgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGTTCAAAGGCAGTGCAGATGACTTTGCCACTGGTGGTACCGGTGGTATTG
ttcatatatataactc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctttctggatcctgatagagctgtgatgttagcagtagattatgcatatggttcatatatataactcattaacagtcttacaatctggcatgatgcagAGGGTTACCTTGATGGTTTTTGATGTTCGAAGTGGCAAGATCCTCCGTGAGTTCAAAGGCAGTGCAGATGACTTTGCCACTGGTGGTACCGGTGGTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG