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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcggatctgcgaagggatttgaggttgaacaaggatacgatgaagttttgtggatgttttcgtaaatcttgctttacaagctatgttttgtgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT

Basic information

species Physcomitrella patens
transcript PP1S136_220V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429205|gb|BY977993.1|BY977993
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|18356860|gb|BJ188919.1|BJ188919
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAG
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAG
EST: gi|100352388|gb|BY983183.1|BY983183
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208393325|gb|DC903999.1|DC903999
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208351521|gb|DC909979.1|DC909979
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162270739|gb|FC446352.1|FC446352
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162208445|gb|FC384408.1|FC384408
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162168874|gb|FC345348.1|FC345348
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|67507874|gb|BJ940750.1|BJ940750
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162271254|gb|FC447191.1|FC447191
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162273379|gb|FC449828.1|FC449828
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|22492259|gb|BU052182.1|BU052182
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208387752|gb|DC941321.1|DC941321
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100399380|gb|BY954341.1|BY954341
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100375740|gb|BY968173.1|BY968173
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTNNGT-GAG-ACGGGAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGT--GTTGAGGACGGGAA
EST: gi|100402534|gb|BY954883.1|BY954883
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100440241|gb|BY962134.1|BY962134
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162212959|gb|FC389175.1|FC389175
EST:     GAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: GAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208388753|gb|DC953487.1|DC953487
EST:     GTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGNAGATGAAATGTTCCGTGTGNTGAGGACGGGAAAA
genomic: GTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100411094|gb|BY956321.1|BY956321
EST:     GTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGNAGATGAAATGTTCCGTGTGNTGAGGACGGGAAAA
genomic: GTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|18352296|gb|BJ184350.1|BJ184350
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGAT
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGAT
EST: gi|162199735|gb|FC375974.1|FC375974
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162241862|gb|FC418117.1|FC418117
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100396887|gb|BY953877.1|BY953877
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208365753|gb|DC935808.1|DC935808
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162270738|gb|FC446351.1|FC446351
EST:     TAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: TAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100437696|gb|BY979783.1|BY979783
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208344530|gb|DC905091.1|DC905091
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208390066|gb|DC938121.1|DC938121
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208385275|gb|DC915075.1|DC915075
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100380682|gb|BY986734.1|BY986734
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208375393|gb|DC940475.1|DC940475
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208391122|gb|DC942062.1|DC942062
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208373470|gb|DC941067.1|DC941067
EST:     AGCANAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAT                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208394661|gb|DC928821.1|DC928821
EST:     GGAGGTGCCTCTTCCTAAG                         GTGCGGCCTA-TGCTGAAGATGAAATGTTCCGTGTG-TGAGGACGGGAAAA
genomic: GGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162184429|gb|FC359175.1|FC359175
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162234658|gb|FC410404.1|FC410404
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208369176|gb|DC936033.1|DC936033
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100361629|gb|BY966146.1|BY966146
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100447434|gb|CJ971733.1|CJ971733
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100366881|gb|BY948257.1|BY948257
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162274757|gb|FC450511.1|FC450511
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162155077|gb|FC330871.1|FC330871
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100415702|gb|BY992962.1|BY992962
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162234657|gb|FC410403.1|FC410403
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|67700239|gb|BJ960472.1|BJ960472
EST:     AGCAGAAACGTAAGGAGNAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|162212960|gb|FC389176.1|FC389176
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100425001|gb|BY976922.1|BY976922
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|100392894|gb|BY989661.1|BY989661
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
EST: gi|208365968|gb|DC951169.1|DC951169
EST:     AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG                         GTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA
genomic: AGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 30 (downstream exon)
Score: 27

GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAGgtgagccgat ... tgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtggatgttttcgtaaatcttgctttacaagctatgttttgtgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT
                 taaatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcggatctgcgaagggatttgaggttgaacaaggatacgatgaagttttgtggatgttttcgtaaatcttgctttacaagctatgttttgtgtggtgtagGTGCGGCCTATTGCTGAAGATGAAATGTTCCGTGTGTTGAGGACGGGAAAAAGAAAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA