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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagtgctttatctacctgcctaatgaaacttagtttctctcttttgcattatcttgtgttcatcgtatctcaaaaagaagcgtccttgtattttatattgtatttcgtgcattgaaagaagttgatttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAATGCTTCAGAAAACCGTATTATGGACTCCAGCGTTAGTCATTCGTCAAGTT

Basic information

species Physcomitrella patens
transcript PP1S134_26V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162189955|gb|FC365619.1|FC365619
EST:     CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAG                         GCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
genomic: CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAGgtatgagtgc ... tttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
EST: gi|162259126|gb|FC435185.1|FC435185
EST:     CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAG                         GCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
genomic: CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAGgtatgagtgc ... tttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
EST: gi|162272666|gb|FC448292.1|FC448292
EST:     CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAG                         GCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
genomic: CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAGgtatgagtgc ... tttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
EST: gi|162189954|gb|FC365618.1|FC365618
EST:     ATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAG                         GCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
genomic: ATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAGgtatgagtgc ... tttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
EST: gi|37843892|gb|BJ601900.1|BJ601900
EST:     CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAG                         GCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
genomic: CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAGgtatgagtgc ... tttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
EST: gi|37845078|gb|BJ603086.1|BJ603086
EST:     CTGCCATTGCAAATTNTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAG                         GCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
genomic: CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAGgtatgagtgc ... tttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
EST: gi|162235645|gb|FC411390.1|FC411390
EST:     CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAG                         GCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT
genomic: CTGCCATTGCAAATTCTCAGACACTCGAAGAAGTTGCCAGGCTGGAAAAGgtatgagtgc ... tttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtccttgtattttatattgtatttcgtgcattgaaagaagttgatttcgtgcagGCCCTCAAGCTAGGGCAACTACCCTCTGACATTGAACTCCCTGGAGTCAATGCTTCAGAAAACCGTATTATGGACTCCAGCGTTAGTCATTCGTCAAGTT
                                       agttgat  putative branch site (score: 5)
     ttgtattttatattgt  TA-rich tract