1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cccgacaggtcgcgcatgtaatctgattaagtaaaatatcacaagcatgtgtttattttatttttaaattttaaataacttttgtggagttcttttacagGGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGACTCTTATGGATGGATTGAAGTCCCGTGCCCATGTTATCGTGATGGGTGCT
species | Physcomitrella patens |
transcript | PP1S133_13V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCACCATCCATTATTTTTATTGATGAAATCGACTCTATTGCACCGAAGAG GGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGACEST: gi|162237742|gb|FC413357.1|FC413357
genomic: GCACCATCCATTATTTTTATTGATGAAATCGACTCTATTGCACCGAAGAGgtattggttt ... tcttttacagGGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGAC
EST: GCACCATCCATTATTTTTATTGATGAAATCGACTCTATTGCACCGAAGAG GGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGACEST: gi|162259431|gb|FC434942.1|FC434942
genomic: GCACCATCCATTATTTTTATTGATGAAATCGACTCTATTGCACCGAAGAGgtattggttt ... tcttttacagGGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGAC
EST: CACCATCCATTATTTTTATTGATGAAATCGACTCTATTGCACCGAAGAG GGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGAC
genomic: CACCATCCATTATTTTTATTGATGAAATCGACTCTATTGCACCGAAGAGgtattggttt ... tcttttacagGGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGAC
catgtgtttattttatttttaaattttaaataacttttgtggagttcttttacagGGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGACTCTTATGGATGGATTGAAGTCCCGTGCCCATGTTATCGTGATGGGTGCT
aaataac putative branch site (score: 6)
ttcttttac putative PPT
tttattttatttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccgacaggtcgcgcatgtaatctgattaagtaaaatatcacaagcatgtgtttattttatttttaaattttaaataacttttgtggagttcttttacagGGAGAAGACTCAAGGAGAGGTGGAAAGGCGAATTGTATCTCAGTTGTTGACTCTTATGGATGGATTGAAGTCCCGTGCCCATGTTATCGTGATGGGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - -cacaagc