1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgtgtttcggttccttgtgtcaacttcctctagtaccttcgatattgacctaattaacgatcttcgtatctattcttctactgttgctaaataagcatgcttttctatgaggttggcaccagaacttgtggaacatgctcgatctaataattggatgcttctttatgggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG
species | Physcomitrella patens |
transcript | PP1S132_95V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|100356048|gb|BY946170.1|BY946170
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|100380016|gb|BY968804.1|BY968804
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|18351892|gb|BJ183944.1|BJ183944
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|100446010|gb|CJ970309.1|CJ970309
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|100390341|gb|BY952749.1|BY952749
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|208390390|gb|DC933435.1|DC933435
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|100448896|gb|CJ973195.1|CJ973195
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|162267156|gb|FC443387.1|FC443387
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|100417339|gb|BY957283.1|BY957283
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACTGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|18365276|gb|BJ197350.1|BJ197350
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|208344839|gb|DC912673.1|DC912673
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|208397779|gb|DC912002.1|DC912002
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|208352476|gb|DC910190.1|DC910190
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|18361573|gb|BJ193639.1|BJ193639
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|208384190|gb|DC911298.1|DC911298
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTACCCGGGACEST: gi|18371678|gb|BJ203280.1|BJ203280
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTATCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGATAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|18332250|gb|BJ164263.1|BJ164263
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGA-A-CCGTGTTGCCACCGTGCAAGCCTTATCCGGGACEST: gi|162263809|gb|FC438428.1|FC438428
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
EST: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAG TCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
genomic: ATTTCTCAGTTCAACAAACTTAGCGCAAAGCTTATTCTGGGCGCTAATAGgtgtgtttcg ... gggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGAC
gaacttgtggaacatgctcgatctaataattggatgcttctttatgggcggccagTCCAGCAATTGCAGAGAACCGTGTTGCCACCGTGCAAGCCTTATCCGGGACTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG
atctaat putative branch site (score: 3)
atctaataatt TA-rich tract