1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatttgtttgaaatacattgacgtgatgtatattgtcgactctgttgagtgtatttgtctgaaactaattaacttcccctgacgtgttggcatggtgcagAGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAGTTCAAGGGCAGTGCTGACGACTTCGCTACTGGTGGAACTGGCGGTATCG
species | Physcomitrella patens |
transcript | PP1S130_248V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAG AGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAGEST: gi|162160007|gb|FC335669.1|FC335669
genomic: TGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAGgtctgtatgc ... catggtgcagAGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAG
EST: TTATGGTGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAG AGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAGEST: gi|162269342|gb|FC445847.1|FC445847
genomic: TTATGGTGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAGgtctgtatgc ... catggtgcagAGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAG
EST: TTATGGTGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAG AGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAGEST: gi|162156617|gb|FC333265.1|FC333265
genomic: TTATGGTGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAGgtctgtatgc ... catggtgcagAGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAG
EST: TTATGGTGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAG AGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAG
genomic: TTATGGTGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAGgtctgtatgc ... catggtgcagAGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAG
tgagtgtatttgtctgaaactaattaacttcccctgacgtgttggcatggtgcagAGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAGTTCAAGGGCAGTGCTGACGACTTCGCTACTGGTGGAACTGGCGGTATCG
aaactaattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttgtttgaaatacattgacgtgatgtatattgtcgactctgttgagtgtatttgtctgaaactaattaacttcccctgacgtgttggcatggtgcagAGGGTCACTTTGATGGTTTTCGATGTTAGGAGTGGCAAGGTTCTGCGCGAGTTCAAGGGCAGTGCTGACGACTTCGCTACTGGTGGAACTGGCGGTATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA