1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacagtaatggaaatttggtgattgatgtactgtcgttctgaatattatgagctttatatcatctttcagcttgttgtgagacgtgcactttgagccttttctcgcttctttttaatcttttttctttatccctaaactaaattgtatccttatccctctttcatttgatttctgcagCCCACGCCTCTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTCGAATATTGGAAGCAGTATGGCGAGTCCATTGGTTTCAGATATGTCGCAA
species | Physcomitrella patens |
transcript | PP1S12_246V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCGTGATGCTGGAGTGGACATATTTACTCTAGGCCAATATTTACAG CCCACGCCTCTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTCEST: gi|162241811|gb|FC418066.1|FC418066
genomic: ATCTGCGTGATGCTGGAGTGGACATATTTACTCTAGGCCAATATTTACAGgtacagtaat ... atttctgcagCCCACGCCTCTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTC
EST: ATCTGCGTGATGCTGGAGTGGACATATTTACTCTAGGCCAATATTTACAG CCCACGCCTCTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTCEST: gi|162167642|gb|FC343761.1|FC343761
genomic: ATCTGCGTGATGCTGGAGTGGACATATTTACTCTAGGCCAATATTTACAGgtacagtaat ... atttctgcagCCCACGCCTCTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTC
EST: ATCTGCGTGATGCTGGAGTGGACATATTTACTTTAGGCCAATATTTACAG CCCACGCCTTTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTC
genomic: ATCTGCGTGATGCTGGAGTGGACATATTTACTCTAGGCCAATATTTACAGgtacagtaat ... atttctgcagCCCACGCCTCTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTC
tctttatccctaaactaaattgtatccttatccctctttcatttgatttctgcagCCCACGCCTCTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTCGAATATTGGAAGCAGTATGGCGAGTCCATTGGTTTCAGATATGTCGCAA
tccttatccctctttc CT-rich tract
taaactaaattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtaatggaaatttggtgattgatgtactgtcgttctgaatattatgagctttatatcatctttcagcttgttgtgagacgtgcactttgagccttttctcgcttctttttaatcttttttctttatccctaaactaaattgtatccttatccctctttcatttgatttctgcagCCCACGCCTCTTCACCTAACTGTGAAGGAGTACGTGACACCCGAGAAGTTCGAATATTGGAAGCAGTATGGCGAGTCCATTGGTTTCAGATATGTCGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG